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Report for CCDS18537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18537.1 Public Mus musculus 4 Klf17 23 108 98 CCDS HistoryNCBI Gene:75753Re-query CCDS DB by CCDS ID:18537.1Re-query CCDS DB by GeneID:75753See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062747.5 ENSMUSP00000052316.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062747.5Link to Ensembl Protein Viewer:ENSMUSP00000052316.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062747Re-query CCDS DB by Protein ID:ENSMUSP00000052316
Original member Current member NCBI NM_029416.2 NP_083692.2 Accepted alive Link to Nucleotide Sequence:NM_029416.2Link to Protein Sequence:NP_083692.2Re-query CCDS DB by Nucleotide ID:NM_029416Re-query CCDS DB by Protein ID:NP_083692Link to BLAST:NP_083692.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083692.2 341 Q8CFA7 341 100% 0 0

Chromosomal Locations for CCDS 18537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117759107 117759288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117760315 117761113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117765501 117765545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGAGCAGGACAATAAGGAACAGGCTATGCACCAGCCTCCCATGGATAATAAGATGTTGGTGCCAGTGT
CGAATGTGCCCGTGTCTTCTGGAAACAGCGGATTTCATCAGCCACCAGCCACTCAATACTTACCAGAGAT
GATGAGGTCCTATATGGCATCAGCTGAGGAGCTCAGATGCAATGAGAGAGAATGGGAATCACAGCTCATT
AGGTCGCTGCCTGAGCATGGTGTGAGGTGCCCCTCCCAGCTGGCTCCTATACCTTTCCAGAATTATTGTC
AGAGATCGATTGGGAGGGGATCCCACGTGATGCCAGTTGGAAGTTCAGGTACTCTGGGAGTGACCATTTC
CTTCAGTGAGAATCTAATGCCTCAGGGTGGCCTGCCAAGTTCCCGTGGAGTCTCAGTGATGGCCCATAGC
AGTGCCCCAGCAATGCCTTATCCTATGCCTCCAACAGTACCTGCCACCACGGGCTCTTTAAAACATGGAA
TATTGTTGGTCCCAGGCATGGCTTCCGCTGGGACCCATGCTGTGGCTCCGTTTATGGATCAGATGTTGCA
CTCCATAAATCCCTGCAATCCTGAGATGCTCCCAGCTAGGTTCCAGCAATTGCTACCTTTAGACTCCCAA
GATTCACTTGTGACTGAGTCAAATACCCAGGAAGAACCTTTCGTACGTGAGCCGCCCACACCTGCTCCAG
AGGGGGCAGAGAGCCCCAGTACTTCAAGAGGGGCAACCAGGAGACAGTCCCCAGTTTCAAGGCCTTATGT
CTGCACATATAACAGCTGTGGAAAATCTTATACCAAGCGCTCTCACCTTGTGAGTCACCAACGCAAACAC
ACAGGTGTGAAGCCCTTCGCATGTGACTGGAACGGATGTACGTGGAAGTTCTTCCGCTCTGATGAGCTTG
GACGACACAAACGGATTCATACCAGATACCGACCACATAAATGCGATGAGTGTGATCGAGAGTTCATGAG
ATCTGACCATCTCAGGCAGCACAAAAGAACGCATCTGCCCAAGTAA

Translation (341 aa):
MEQDNKEQAMHQPPMDNKMLVPVSNVPVSSGNSGFHQPPATQYLPEMMRSYMASAEELRCNEREWESQLI
RSLPEHGVRCPSQLAPIPFQNYCQRSIGRGSHVMPVGSSGTLGVTISFSENLMPQGGLPSSRGVSVMAHS
SAPAMPYPMPPTVPATTGSLKHGILLVPGMASAGTHAVAPFMDQMLHSINPCNPEMLPARFQQLLPLDSQ
DSLVTESNTQEEPFVREPPTPAPEGAESPSTSRGATRRQSPVSRPYVCTYNSCGKSYTKRSHLVSHQRKH
TGVKPFACDWNGCTWKFFRSDELGRHKRIHTRYRPHKCDECDREFMRSDHLRQHKRTHLPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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