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Report for CCDS18463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18463.1 Public Mus musculus 4 Ttc39a 23 108 98 CCDS HistoryNCBI Gene:230603Re-query CCDS DB by CCDS ID:18463.1Re-query CCDS DB by GeneID:230603See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18463.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064129.13 ENSMUSP00000066334.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064129.13Link to Ensembl Protein Viewer:ENSMUSP00000066334.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000064129Re-query CCDS DB by Protein ID:ENSMUSP00000066334
Original member NCBI NM_153392.2 NP_700441.2 Updated not alive Link to Nucleotide Sequence:NM_153392.2Link to Protein Sequence:NP_700441.2Re-query CCDS DB by Nucleotide ID:NM_153392Re-query CCDS DB by Protein ID:NP_700441
Current member NCBI NM_153392.3 NP_700441.2 Accepted alive Link to Nucleotide Sequence:NM_153392.3Link to Protein Sequence:NP_700441.2Re-query CCDS DB by Nucleotide ID:NM_153392Re-query CCDS DB by Protein ID:NP_700441Link to BLAST:NP_700441.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700441.2 576 A2ACP1-2 576 100% 0 0

Chromosomal Locations for CCDS 18463.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 109407172 109407209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109415987 109416091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109421293 109421424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109422446 109422522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109422875 109422942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109426301 109426365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109428131 109428230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109428887 109428952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109430856 109430964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109431391 109431458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109431539 109431598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109432989 109433150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109438749 109438840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109440522 109440642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109442227 109442338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109442697 109442811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109443508 109443624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109444082 109444205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGACCACGGCCAGCGGCCCGGGCGACCTGCCGGCGGGGTCTCCTGTGAGCAGCCTCCATGAGGCCCTGG
ACCAGTGCATGACAGCCCTGGACCTCTTCCTTACCAACCAGTTCTCAGAAGCACTCAGCTACCTCAAACC
CAGAACCAAGGAGAGCATGTATCACTCCCTGACGTATGCCACCATCCTGGAGATGCAGGCCATGATGACC
TTCGACCCCCAGGACATCCTGCTTGCTGGCAACATGATGAAAGAAGCGCAGTCGCTGTGTCAGAGGCATC
GAAGGAAGTCTTCTATGACGGACTCATTCAGCAACCTGGTGCACCGTCCTACCATTGACCAGTTCACAGA
AGAGGAAATCCATGCAGAGGTCTGTTATGCAGAATGCCTACTACAGAGAGCGGCCCTGACCTTCCTGCAG
GACGAGAACATGGTGAGCTTCATCAAGGGCGGCATCAAAGTGCGGAACAGCTACCAGACTTACAAGGAAC
TGGATAGCCTCGTCCAGTCCTCGCAATACTCTAAGGGAGAGAGCCACAGACACTTTGAAGGAGGGGTGAA
GCTTGGCGTAGGAGCCTTCAACCTGACGCTGTCCATGCTTCCCACCAGGATTCTGAGGCTGCTGGAGTTT
GTTGGGTTTTCAGGAAACAAGGACTATGGGCTGCTGCAGCTGGAGGAGGGCGCAACCGGACACAGCTTCC
GTGCAGTGCTGTGCGTCATGCTGTTGCTGTGTTATCACACCTTCCTCACCTTCGTGCTCGGTACTGGGAA
TGTCAACATCGAGGAGGCAGAGAAGCTGCTGAAGCCCTACCTGAACCGATACCCCAAGGGCGCCATCTTC
CTGTTCTTTGCTGGGCGGATTGAAGCTATCAAAGGAAATATTGATGCTGCTGTCCGGCGGTTTGAGGAGT
GCTGCGAGGCCCAGCAGCACTGGAAGCAGTTTCACCACATGTGCTACTGGGAGCTGATGTGGTGCTTTAC
CTACAAGGGCCAGTGGAAAATGGCCTACTTCTACGCCGACCTGCTGAGCAAGGAGAACTCCTGGTCCAAG
GCCACCTACATCTACATGAAGGCTGCCTACCTCAGCATGTTTGGGAAGGAAGACTACAAGCCATTCGGGG
ACAATGAAGTGGAGTTATTCAGGGCCGTGCCAGGCTTGAAGCTCAAGATTGCTGGGAAATCTCTACCCAC
AGAGAAGTTTGCTATCCGGAAGTCCAGGCGCTACCTCTCCCCCAACCCCATCTCCTTGCCGATCCCTGCT
CTGGAAATGATGTACATCTGGAATGGCTATGCTGTGATTGGGAAGCAGCCGACACTCACGGATGGGATGC
TGGAGGTCATCACCAAGGCTGAAGAGATGCTGGCAATGGGCCCAGAGAATGAGTACTCAGCAGATGACGA
CTGCTTGGTTAAATTGCTGAAAGGCCTGTGTCTGAAATACCTGGGCCGAATCCAGGAGGCAGAGGAGAAT
TTCAGGAGCATTTCTGCCAATGAAAAGAAGATTAAATATGACCATTACTTGATTCCAAATGCCCTACTGG
AACTGGCCCTGCTATTTATGGAGCAAGGCAGAAATGAGGAGGCCATCAAACTCTTAGAGTCTGCAAAGCA
AAACTACAAGAACTACTCCATGGAGTCAAGGACACATTTTCGAATCCAGGCAGCCACACTCCAGGCCAGA
TCTTCCCTAGAAGATGGCAACAGATCTCTAGTCTCGTCAGTGTCCTTGTAG

Translation (576 aa):
MTTASGPGDLPAGSPVSSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMT
FDPQDILLAGNMMKEAQSLCQRHRRKSSMTDSFSNLVHRPTIDQFTEEEIHAEVCYAECLLQRAALTFLQ
DENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYSKGESHRHFEGGVKLGVGAFNLTLSMLPTRILRLLEF
VGFSGNKDYGLLQLEEGATGHSFRAVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIF
LFFAGRIEAIKGNIDAAVRRFEECCEAQQHWKQFHHMCYWELMWCFTYKGQWKMAYFYADLLSKENSWSK
ATYIYMKAAYLSMFGKEDYKPFGDNEVELFRAVPGLKLKIAGKSLPTEKFAIRKSRRYLSPNPISLPIPA
LEMMYIWNGYAVIGKQPTLTDGMLEVITKAEEMLAMGPENEYSADDDCLVKLLKGLCLKYLGRIQEAEEN
FRSISANEKKIKYDHYLIPNALLELALLFMEQGRNEEAIKLLESAKQNYKNYSMESRTHFRIQAATLQAR
SSLEDGNRSLVSSVSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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