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Report for CCDS18403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18403.1 Public Mus musculus 4 Pde4b 23 108 98 CCDS HistoryNCBI Gene:18578Re-query CCDS DB by CCDS ID:18403.1Re-query CCDS DB by GeneID:18578See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106908.8 ENSMUSP00000102521.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106908.8Link to Ensembl Protein Viewer:ENSMUSP00000102521.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106908Re-query CCDS DB by Protein ID:ENSMUSP00000102521
Original member NCBI NM_019840.2 NP_062814.2 Updated not alive Link to Nucleotide Sequence:NM_019840.2Link to Protein Sequence:NP_062814.2Re-query CCDS DB by Nucleotide ID:NM_019840Re-query CCDS DB by Protein ID:NP_062814
Current member NCBI NM_019840.3 NP_062814.2 Accepted alive Link to Nucleotide Sequence:NM_019840.3Link to Protein Sequence:NP_062814.2Re-query CCDS DB by Nucleotide ID:NM_019840Re-query CCDS DB by Protein ID:NP_062814Link to BLAST:NP_062814.2

Chromosomal Locations for CCDS 18403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102255221 102255456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102487211 102487405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102497622 102497658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102497754 102497824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102505993 102506042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102570766 102570878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102590831 102590924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102595934 102596112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102597459 102597557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102597694 102597858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102599643 102599742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102601533 102601687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102601779 102601901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102602587 102602769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102604974 102605339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2166 nt):
ATGACAGCAAAAAATTCTCCAAAAGAATTTACTGCTTCGGAATCTGAGGTTTGCATAAAGACTTTCAAGG
AGCAGATGCGCTTGGAACTTGAGCTTCCAAAGCTACCAGGAAACAGACCTACATCTCCCAAAATTTCTCC
ACGCAGTTCACCAAGGAATTCACCATGCTTTTTCAGAAAGTTGCTGGTGAATAAAAGCATCCGACAGCGG
CGTCGCTTCACGGTGGCTCATACATGCTTTGATGTGGAAAATGGCCCTTCTCCAGGTCGGAGCCCACTGG
ACCCTCAAGCCGGCTCTTCGTCGGGACTGGTACTTCATGCCGCCTTTCCTGGGCACAGCCAGCGCAGGGA
GTCGTTCCTCTACAGATCTGACAGCGACTATGACTTGTCACCAAAAGCGATGTCCAGGAACTCATCACTT
CCCAGTGAGCAACACGGCGATGACCTGATTGTCACTCCTTTTGCCCAGGTTCTTGCCAGCTTGCGAAGTG
TAAGAAACAACTTCACCCTGCTGACGAACCTTCATGGAGCGCCGAACAAGAGGTCACCAGCGGCTAGTCA
GGCTCCAGTCTCCAGAGTCAGCCTGCAAGAAGAATCATATCAGAAACTAGCAATGGAGACGCTGGAGGAA
CTAGACTGGTGCCTAGACCAGCTAGAGACCATCCAGACCTACCGCTCTGTCAGCGAGATGGCTTCAAACA
AGTTCAAAAGGATGCTGAACCGGGAGCTGACACACCTCTCAGAGATGAGCAGATCAGGGAACCAGGTGTC
TGAGTACATTTCAAACACGTTCTTAGACAAGCAGAACGATGTGGAAATCCCATCTCCCACGCAGAAGGAC
AGGGAGAAGAAGAAGAAGCAGCAGCTCATGACCCAGATAAGTGGAGTGAAGAAACTGATGCACAGCTCAA
GCCTGAACAACACAAGCATCTCACGCTTCGGAGTCAACACGGAAAATGAGGATCATCTAGCCAAGGAGCT
GGAAGACCTGAACAAATGGGGCCTTAACATCTTCAATGTGGCTGGGTACTCACATAATCGGCCCCTTACG
TGCATCATGTATGCAATATTCCAGGAAAGAGACCTTCTGAAGACGTTTAAAATCTCATCTGACACCTTTG
TAACCTACATGATGACTTTAGAAGACCATTACCATTCTGATGTGGCATATCACAACAGCCTGCATGCTGC
TGACGTGGCCCAGTCAACTCACGTTCTCCTTTCTACGCCGGCACTGGATGCTGTCTTCACAGACCTGGAA
ATCCTGGCTGCCATTTTTGCAGCTGCCATCCATGATGTCGATCATCCTGGAGTCTCCAATCAGTTTCTCA
TCAATACAAATTCTGAACTTGCTTTGATGTATAATGATGAATCTGTTCTGGAAAACCATCACCTTGCTGT
GGGATTCAAATTGCTACAAGAGGAACACTGCGACATCTTTCAGAATCTTACCAAGAAGCAACGCCAGACA
CTCAGGAAAATGGTGATTGACATGGTGTTGGCAACTGATATGTCCAAACACATGAGCCTCCTGGCAGACC
TTAAAACAATGGTAGAAACCAAGAAGGTGACAAGCTCCGGTGTTCTCCTCCTGGACAACTATACTGACCG
GATACAGGTTCTTCGCAACATGGTACACTGTGCAGACCTGAGCAACCCCACCAAGTCCTTGGAATTGTAT
CGGCAATGGACCGATCGTATCATGGAGGAGTTTTTCCAGCAGGGAGACAAAGAACGGGAGAGGGGAATGG
AGATTAGCCCAATGTGTGATAAGCACACAGCTTCTGTGGAAAAATCCCAGGTTGGTTTCATTGACTACAT
TGTCCATCCACTGTGGGAGACCTGGGCAGACCTGGTTCAACCGGATGCTCAAGATATTCTGGATACACTA
GAAGATAACAGGAACTGGTACCAGAGTATGATACCCCAGAGCCCTTCCCCGCCACTGGATGAGAGGAGCA
GGGACTGCCAAGGCCTGATGGAGAAGTTTCAGTTTGAACTGACCCTTGAGGAAGAGGATTCTGAGGGACC
GGAAAAGGAGGGAGAAGGCCACAGCTATTTCAGCAGCACAAAGACGCTTTGTGTGATTGATCCAGAGAAC
AGGGATTCTCTGGAAGAGACTGACATAGACATTGCAACAGAAGACAAGTCTCCGATCGACACATAA

Translation (721 aa):
MTAKNSPKEFTASESEVCIKTFKEQMRLELELPKLPGNRPTSPKISPRSSPRNSPCFFRKLLVNKSIRQR
RRFTVAHTCFDVENGPSPGRSPLDPQAGSSSGLVLHAAFPGHSQRRESFLYRSDSDYDLSPKAMSRNSSL
PSEQHGDDLIVTPFAQVLASLRSVRNNFTLLTNLHGAPNKRSPAASQAPVSRVSLQEESYQKLAMETLEE
LDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKD
REKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLT
CIMYAIFQERDLLKTFKISSDTFVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLE
ILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEEHCDIFQNLTKKQRQT
LRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELY
RQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTL
EDNRNWYQSMIPQSPSPPLDERSRDCQGLMEKFQFELTLEEEDSEGPEKEGEGHSYFSSTKTLCVIDPEN
RDSLEETDIDIATEDKSPIDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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