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Report for CCDS17949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17949.1 Public Mus musculus 4 Ubxn2b 23 108 98 CCDS HistoryNCBI Gene:68053Re-query CCDS DB by CCDS ID:17949.1Re-query CCDS DB by GeneID:68053See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17949.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029907.5 ENSMUSP00000029907.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029907.5Link to Ensembl Protein Viewer:ENSMUSP00000029907.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029907Re-query CCDS DB by Protein ID:ENSMUSP00000029907
Original member Current member NCBI NM_026534.2 NP_080810.2 Accepted alive Link to Nucleotide Sequence:NM_026534.2Link to Protein Sequence:NP_080810.2Re-query CCDS DB by Nucleotide ID:NM_026534Re-query CCDS DB by Protein ID:NP_080810Link to BLAST:NP_080810.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080810.2 331 Q0KL01 331 100% 0 0

Chromosomal Locations for CCDS 17949.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 6191130 6191213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6196411 6196514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6202292 6202442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6203777 6203860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6204564 6204673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6208806 6208943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6214639 6214800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6215912 6216074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGCGGAGGGTGGCCGTGCGGAGCCGGAGGAGCAGGAGCGTGGGTCCTCCAGGCCACGGCCCCCAAGTG
CGCGGGACTTACAGTTGGCCTTGGCAGAATTATATGAAGATGAAATGAAATGCAAGTCTTCCAAGCCTGA
CAGATCCACACCTGCAACCTGTAGGAGCCCACGAACACCGCCACATCGGCTTTATTCAGGTGATCACAAA
TATGATGGATTACATATAGTTCAACCTCCAACTGGGAAAATTGTGAATGAACTTTTCAAAGAGGCAAGGG
AACATGGAGCTGTCCCTCTAAACGAAGCCACAAGATCTTCAAGGGAAGACAAAACTAAGTCATTTACAGG
TGGAGGATACAGATTGGGGAATTCCTTCTACAAGCGATCAGAGTATATCTATGGGGAAAATCAGCTCCAA
GATGTTCAGGTTTTACTGAAGCTGTGGCGCAATGGTTTCAGTTTAGACGATGGAGAATTGAGGCCTTACA
GTGACCCAACAAATGCTCAGTTTTTGGAATCTGTTAAGAGAGGAGAGACTCCCCTGGAGCTTCAGCGACT
GGTCCATGGCGCCCAAGTGAACCTGGATATGGAGGATCATCAAGACCAAGAGTACATAAAACCCAGGTTG
CGATTCAAGGCTTTTAGTGGAGAAGGGCAAAAACTTGGAAGCCTTACACCTGAAATCGTCAGTACTCCTT
CCTCCCCAGAAGAAGAGGATAAATCAATACTGAATGCAGCTGTTCTTATTGATGATTCAATGCCCACCAC
AAAAATTCAGATCAGGTTGGCAGATGGAAGTCGTCTCGTACAGAGATTCAATAGCACACACCGGATTCTG
GATGTACGAGACTTTATAGTACGGTCACGTCCTGAATTTGCGACTACTGACTTTATTCTTGTGACTTCAT
TTCCAAGTAAAGAACTAACAGATGAAACCGTGACACTACAAGAAGCGGACATTCTTAACACTGTGATACT
CCAACAGCTAAAATAG

Translation (331 aa):
MAEGGRAEPEEQERGSSRPRPPSARDLQLALAELYEDEMKCKSSKPDRSTPATCRSPRTPPHRLYSGDHK
YDGLHIVQPPTGKIVNELFKEAREHGAVPLNEATRSSREDKTKSFTGGGYRLGNSFYKRSEYIYGENQLQ
DVQVLLKLWRNGFSLDDGELRPYSDPTNAQFLESVKRGETPLELQRLVHGAQVNLDMEDHQDQEYIKPRL
RFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAAVLIDDSMPTTKIQIRLADGSRLVQRFNSTHRIL
DVRDFIVRSRPEFATTDFILVTSFPSKELTDETVTLQEADILNTVILQQLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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