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Report for CCDS17840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17840.1 Public Mus musculus 3 Sec24b 23 108 98 CCDS HistoryNCBI Gene:99683Re-query CCDS DB by CCDS ID:17840.1Re-query CCDS DB by GeneID:99683See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17840.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001079.14 ENSMUSP00000001079.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001079.14Link to Ensembl Protein Viewer:ENSMUSP00000001079.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000001079Re-query CCDS DB by Protein ID:ENSMUSP00000001079
Original member NCBI NM_207209.3 NP_997092.1 Updated not alive Link to Nucleotide Sequence:NM_207209.3Link to Protein Sequence:NP_997092.1Re-query CCDS DB by Nucleotide ID:NM_207209Re-query CCDS DB by Protein ID:NP_997092
Current member NCBI NM_207209.4 NP_997092.1 Accepted alive Link to Nucleotide Sequence:NM_207209.4Link to Protein Sequence:NP_997092.1Re-query CCDS DB by Nucleotide ID:NM_207209Re-query CCDS DB by Protein ID:NP_997092Link to BLAST:NP_997092.1

Chromosomal Locations for CCDS 17840.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129983892 129984006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129984167 129984270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129987687 129987779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129988896 129989000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129989649 129989786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129990295 129990470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129991331 129991441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129992975 129993148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129993730 129993888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129994269 129994392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129995914 129996120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129996341 129996396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129996681 129996799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129999512 129999624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130002305 130002414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130002940 130003066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130004994 130005096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130007411 130007595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130009662 130009894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130011792 130011872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130020538 130020642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130033831 130033974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130040674 130041447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130060569 130060668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3756 nt):
ATGTCGGCCCCCGCCGGGTCCCCTCACCCGGCCGCCGGCGCCCGGATGCCGCCCAAGCTCGGCGGAGCTG
TCTCCGGCCTGGCACCGCCGCAGCAGAACGGTCCAGCACAGAGTCCAATGCAAGTTCCATCTGGGTATGG
GCTGCCTCATCAAAACTATATGGTCCCTTCAGGACATTACTCTCAAGGACCTGGGAAAATGACCTCCTTG
CCATTGGATAGCCAGTGTGATAGTTACTACTCTCGTCCATATACAGTACCAACACAAAATTCGGGGACTC
CCAGCTCAGCAAACCAACCAGGAGCACAGCAGATGTATGGCAGAGGTCCTTCCGCTCCTCACATGGGGGG
CTCCATGCCCGGATCTTTCCAAGGAATTCCAGCATCAGCATCCCATTCCTATTCGAGTGCCTCCCAGCCC
TACTCCTCTCTTGGGAATCGCTACAGTAGTCCTACCACGTACTCTGCCAATGCTTCTGTTGCTTCTCAGG
GATATCCCTCTACCTGTAGTCATTATCCCATCTCAACTGTGTCTAATGTGGTGTATCCTAATGTTTCCTA
TCCCTCGCTGCCTGCCAGTGAGCCATATGGGCAGATGTTTACCTCACAGAGTGCTCCTCCACCTGCCAGG
CCAGTTAAAGAGTCATACTCTGGCCCCAGCACAGCTCTTACCTACCCCTCGAGACCTCCACCTCCACCTT
CTCAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGTCATTCAGGATATAG
TTCTCTACCATGGTCAGGTCCAGCCCTTCCACCAGCCCAAGACAGCCTCATCCGAAACCAAATGGGATCC
TTGGCTACAGCGAACAGCCACCCAACTAATAATGAAAATGTCCAACCTCCCAAGTCAAGCTCCGTAGTAT
CCACAGTTTTGCCAGGACCCTCATCAACAAGAATGCCACCTGCTCCAAGTCACCCAGTTGGGCCTGTGCC
CTCTGCTCCACCCCCCCCAGAGCAGATGCAGACTAAAGGCATGCAGTATGGTGACTATGGTAATAATCAA
GCTAGCTCCACAGCGACTCCCTTGTCATCAGCTTCCGATGATGAGGAGGAGCAGGAGGAGGATGAGGAAG
CAGGTGTTGACAGCTCTTCCACCACCAGCAGTGCTTCGCCCTTGCCCAACAGTTACGATGCCTTGGAAGG
AGGCAGCTACCCAGATATGCATTCTTCTTCAGCAAGCAGCCCTGTTCCTGACCATGCCCTGGAACCCAGT
CCCACCCTCGCCCAGGCTCTGTCTGCAGCCCCCACTCCCCCTGCAGCTCAGCCAGCCAAGGTGGCAAAGC
CTTTTGGCTATGGCTACCCAGCTCTGCAGCCTGCCTATCAGAACGCAGCACCACCACCCATGCCCGCAGC
ACATCCCAGCGGCCCAGCGTACACTGGATATCCTCAGCATTACCCAGGTGTGAACCAGCTGTCCTCAGGT
CTCGGAGGACTAAGCCTGCAGAGTTCTCCACAGCCAGAAAGCCTAAGACCTGTCAACCTCACCCAGGAGA
AAAATATTTTACCTCCAACTCCTATTTGGGCTCCTGTACCTAACCTGAGTGCAGAACTCAGCAAGTTAAA
CTGTAGTCCAGACTCGTTTCGATGTACCTTGACCAGTATCCCCCAGACACAGGCTTTACTGAATAAAGCT
AAGCTTCCTTTAGGATTGCTGTTGCATCCCTTCAGAGACCTGACGCAATTGCCAGTGATAACCTCAAACA
CCATCGTGAGGTGCCGGTCCTGTCGGACGTACATCAACCCTTTTGTGTCCTTCATTGATCAGCGAAGATG
GAAATGCAACCTGTGTTATAGAGTTAATGATGTTCCAGAAGAGTTTTTGTACAACCCCCTGACTCGGTCT
TACGGAGAGCCTCATAAACGGCCAGAAGTCCAGAATTCTACTGTGGAGTTCATCGCATCCTCAGACTACA
TGCTCCGGCCTCCTCAGCCCGCGGTCTACTTGTTTGTTTTAGATGTGTCTCATAACGCAGTGGAAGCTGG
GTATTTGACAGTTTTATGCCAGTCCTTATTAGAAAACTTAGACAAGCTTCCTGGAGATTCACGAACAAGA
ATAGGATTCATGACTTTTGACAGCACCATTCACTTCTACAATCTACAAGAAGGGTTATCCCAGCCGCAGA
TGTTGATTGTATCTGATATAGACGATGTTTTTCTGCCCACGCCGGATAGTCTGCTTGTGAATCTGTATGA
AAGCAAAGAGCTTATAAAAGACTTACTGAATGCATTACCAAGTATGTTCATCAATACCAGAGAAACACAC
AGTGCCCTTGGACCTGCACTTCAGGCTGCCTTCAAACTCATGTCTCCCACGGGCGGCCGCGTGTCTGTAT
TTCAGACACAGTTACCTTCCTTGGGGGCAGGACTTCTGCAGTCCAGAGAAGATCCGAATCAGAGGTCGAG
TACCAAGGTGGTGCACCATCTTGGCCCTGCAACCGACTTTTATAAGAAGCTCGCTTTAGATTGCTCAGGG
CAGCAAACTGCAGTGGATTTGTTCCTTCTAAGTTCACAGTATTCTGACCTTGCTTCTCTGGCTTGCATGT
CCAAGTACTCTGCAGGGTGCATATTCTACTATCCATCTTTCCACTCTACCCACAATCCTTCGCAAGCAGA
AAAGTTACAAAAAGACCTAAAACGGTACCTCACGAGGAAGATTGGATTTGAAGCTGTTATGAGAATAAGA
TGCACTAAAGGGCTCTCAATGCACACTTTCCACGGGAACTTCTTTGTCCGCTCCACCGACTTACTGTCTC
TTGCCAACATCAATCCTGATGCTGGGTTTGCAGTACAGTTGTCAATCGAAGAGAGCCTGACAGATACTGC
CTTAGTGTGCTTTCAGACAGCCCTGCTGTACACATCTAGCAAAGGCGAGCGGAGAATTCGAGTGCATACA
CTGTGCTTGCCAGTCGTAAGTTCCCTCGCTGACGTTTATGCAGGAGTGGATGTGCAAGCCGCTGTCTGCC
TTCTCGCCAACATGGCTGTGGACCGCTCAGTGTCATCGAGCCTGTCGGATGCCAGGGATGCCCTGGTGAA
CGCTGTGGTGGATCCCCTGTCTGCCTACAGCTCCGCCGTGGCAAGTGTGCCCCGCTCCACCCTGACAGCA
CCAAGCTCACTTAAGCTGCTCCCACTCTATGTTTTGGCACTTCTTAAACAGAAAGCATTTAGAACAGGGA
CAAGCACACGCCTGGATGACCGTGTCTATGCCATGTGCCAGATGAAGTCGCAGCCGCTTGTGCATCTCAT
GAAAATGATTCATCCCAACTTATACAGGATAGACAGGCTGACAGACGAGGGCGCCATCCACGTGAATGAC
AGGGTAGTACCTCAGCCACCGCTTCAGAAGCTGTCTGCAGAGAAGCTGACCCGAGAAGGCGCTTTCCTCA
TGGACTGCGGCTCAGTTTTCTACATTTGGGTTGGCAAAGGCTGTGACAGTAACTTCATAGAGAACGTGCT
TGGATACCCTGACTTTGCATCAATACCACAGAAAATGACACATCTTCCAGAGCTAGACACACTTCCATCA
GAAAGAACTAGATCCTTTGTGACTTGGCTCAGGGACAGCCGACCGTTAAGCCCTGTCCTTCACTTGGTAA
AAGATGAGAGCCCTGCCAAAACAGACTTTTTCCAGCATTTGCTTGAAGACCGCACGGAAGCCGCACTCTC
CTACTATGAGTTTCTGATTCACATCCAACAGCAGGTTTGTAAGTGA

Translation (1251 aa):
MSAPAGSPHPAAGARMPPKLGGAVSGLAPPQQNGPAQSPMQVPSGYGLPHQNYMVPSGHYSQGPGKMTSL
PLDSQCDSYYSRPYTVPTQNSGTPSSANQPGAQQMYGRGPSAPHMGGSMPGSFQGIPASASHSYSSASQP
YSSLGNRYSSPTTYSANASVASQGYPSTCSHYPISTVSNVVYPNVSYPSLPASEPYGQMFTSQSAPPPAR
PVKESYSGPSTALTYPSRPPPPPSQHQQQQQQQQQQQQQQQSHSGYSSLPWSGPALPPAQDSLIRNQMGS
LATANSHPTNNENVQPPKSSSVVSTVLPGPSSTRMPPAPSHPVGPVPSAPPPPEQMQTKGMQYGDYGNNQ
ASSTATPLSSASDDEEEQEEDEEAGVDSSSTTSSASPLPNSYDALEGGSYPDMHSSSASSPVPDHALEPS
PTLAQALSAAPTPPAAQPAKVAKPFGYGYPALQPAYQNAAPPPMPAAHPSGPAYTGYPQHYPGVNQLSSG
LGGLSLQSSPQPESLRPVNLTQEKNILPPTPIWAPVPNLSAELSKLNCSPDSFRCTLTSIPQTQALLNKA
KLPLGLLLHPFRDLTQLPVITSNTIVRCRSCRTYINPFVSFIDQRRWKCNLCYRVNDVPEEFLYNPLTRS
YGEPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTVLCQSLLENLDKLPGDSRTR
IGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPSMFINTRETH
SALGPALQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQSREDPNQRSSTKVVHHLGPATDFYKKLALDCSG
QQTAVDLFLLSSQYSDLASLACMSKYSAGCIFYYPSFHSTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIR
CTKGLSMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTALVCFQTALLYTSSKGERRIRVHT
LCLPVVSSLADVYAGVDVQAAVCLLANMAVDRSVSSSLSDARDALVNAVVDPLSAYSSAVASVPRSTLTA
PSSLKLLPLYVLALLKQKAFRTGTSTRLDDRVYAMCQMKSQPLVHLMKMIHPNLYRIDRLTDEGAIHVND
RVVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDSNFIENVLGYPDFASIPQKMTHLPELDTLPS
ERTRSFVTWLRDSRPLSPVLHLVKDESPAKTDFFQHLLEDRTEAALSYYEFLIHIQQQVCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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