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Report for CCDS17768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17768.1 Public Mus musculus 3 Stxbp3 23 108 98 CCDS HistoryNCBI Gene:20912Re-query CCDS DB by CCDS ID:17768.1Re-query CCDS DB by GeneID:20912See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17768.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102621.10 ENSMUSP00000099681.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102621.10Link to Ensembl Protein Viewer:ENSMUSP00000099681.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102621Re-query CCDS DB by Protein ID:ENSMUSP00000099681
Original member Current member NCBI NM_011504.1 NP_035634.1 Accepted alive Link to Nucleotide Sequence:NM_011504.1Link to Protein Sequence:NP_035634.1Re-query CCDS DB by Nucleotide ID:NM_011504Re-query CCDS DB by Protein ID:NP_035634Link to BLAST:NP_035634.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035634.1 592 Q60770-1 592 100% 0 0

Chromosomal Locations for CCDS 17768.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108793773 108793864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108794802 108794953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108797381 108797466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108799224 108799316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108800055 108800161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108800735 108800873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108802111 108802191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108803546 108803611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108805058 108805115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108805238 108805333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108809877 108810001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108812878 108812968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108816325 108816479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108821788 108821888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108822515 108822593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108826006 108826082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108827026 108827107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108827573 108827622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108840420 108840468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGGCGCCGCCGGTATCGGAGCGGGGACTGAAGAGCGTCGTGTGGCGGAAGATAAAAACAGCCGTGTTCG
AT
GACTGCCGGAAAGAAGGCGAATGGAAGATAATGCTGTTAGATGAGTTTACCACCAAACTTTTGTCGTC
A
TGCTGCAAAATGACAGACCTTCTAGAGGAGGGCATAACTGTTATAGAGAATATTTATAAGAATCGTGAA
CCT
GTCAGACAAATGAAAGCTCTTTATTTCATCTCTCCAACACCAAAATCTGTAGATTGTTTCTTGAGAG
AT
TTTGGAAGTAAATCTGAGAAAAAATACAAAGCAGCGTATATATACTTCACTGACTTTTGTCCTGACAG
T
CTCTTTAACAAGATTAAAGCATCTTGCTCCAAGTCAATAAGAAGATGTAAGGAAATAAACATTTCCTTC
ATT
CCACAGGAATCTCAGGTTTATACTCTTGATGTACCGGACGCATTCTATTACTGTTACAGTCCAGACC
CT
AGTAACGCCAGCAGGAAAGAAGTGGTCATGGAGGCAATGGCTGAGCAGATTGTGACAGTGTGTGCCAC
T
CTGGATGAAAACCCTGGAGTGAGGTACAAGAGTAAACCTCTAGATAATGCCAGTAAGCTTGCACAGCTG
GTT
GAGAAAAAGCTTGAAGACTACTACAAAATTGATGAAAAAGGCCTAATAAAGGGTAAAACTCAGTCCC
AG
CTCTTAATAATTGACCGTGGCTTTGACCCTGTGTCCACTGTCCTGCATGAACTGACCTTTCAGGCAAT
G
GCATATGATCTACTACCAATTGAGAATGATACATACAAGTACAAAACAGATGGAAAAGAGAAGGAGGCA
GTT
CTTGAAGAAGACGACGACCTGTGGGTGCGGGTTCGACACCGGCACATCGCGGTTGTGTTGGAGGAAA
TT
CCAAAGCTTATGAAGGAAATTTCATCAACAAAGAAAGCTACAGAGGGGAAGACATCACTTAGCGCTCT
T
ACCCAGCTGATGAAAAAGATGCCGCACTTCCGAAAGCAGATCTCGAAGCAAGTAGTCCATCTTAACTTA
GCT
GAAGACTGCATGAATAAGTTTAAGCTGAATATTGAGAAGCTCTGCAAAACTGAGCAGGACCTGGCAC
TT
GGAACAGATGCTGAAGGCCAGCGGGTGAAGGACTCCATGCTGGTGCTCCTCCCAGTGCTGCTCAACAA
A
AACCATGACAACTGCGACAAAATACGGGCAGTCCTGCTCTACATCTTCGGGATTAATGGAACCACTGAA
GAA
AATCTGGACAGACTGATCCACAATGTAAAGATAGAAGATGATAGTGATATGATTCGTAACTGGAGCC
AC
CTTGGTGTTCCCATTGTTCCCCCATCCCAGCAAGCCAAACCACTGAGAAAGGATCGGTCTGCAGAAGA
G
ACTTTTCAGCTTTCTCGATGGACACCTTTTATCAAAGATATCATGGAGGATGCCATTGATAATAGATTA
GAT
TCCAAAGAGTGGCCGTATTGTTCCCGGTGCCCAGCAGTGTGGAATGGCTCTGGAGCTGTGAGTGCTC
GC
CAGAAACCCAGAACTAACTACTTAGAGCTGGACCGGAAAAATGGGTCAAGGCTGATTATTTTTGTAAT
T
GGAGGAATTACGTACTCTGAGATGCGGTGTGCTTATGAAGTTTCCCAGGCACATAAATCCTGTGAGGTT
ATT
ATTGGTTCCACACATATTTTAACACCCAGAAAGCTCCTGGATGATATAAAAATGCTGAATAAATCAA
AG
GATAAAGTTTCCTTTAAGGATGAGTAA


Translation (592 aa):
MAPPVSERGLKSVVWRKIKTAVFDDCRKEGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNRE
P
VRQMKALYFISPTPK
SVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIKASCSKSIRRCKEINISF
I
PQESQ
VYTLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLDNASKLAQL
V
EKKLEDYYKIDEKGLIK
GKTQSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKTDGKEKEA
V
LEEDDDLWVRVRHRHIAVVL
EEIPKLMKEISSTKKATEGKTSLSALTQLMKKMPHFRKQISKQVVHLNL
A
EDCMNKFKLNIEKLCKTEQ
DLALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRAVLLYIFGINGTTE
E
NLDRLIHNVKIEDDSDMIRNWSHLGVPIVPP
SQQAKPLRKDRSAEETFQLSRWTPFIKDIMEDAIDNRL
D
SKEWPYCSRCPAVWNGSGAV
SARQKPRTNYLELDRKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEV
I
I
GSTHILTPRKLLDDIKMLNKSKDKVSFKDE



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser