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Report for CCDS17685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17685.1 Public Mus musculus 3 Nhlh2 23 108 98 CCDS HistoryNCBI Gene:18072Re-query CCDS DB by CCDS ID:17685.1Re-query CCDS DB by GeneID:18072See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17685.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066187.5 ENSMUSP00000064355.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066187.5Link to Ensembl Protein Viewer:ENSMUSP00000064355.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066187Re-query CCDS DB by Protein ID:ENSMUSP00000064355
Original member Current member EBI ENSMUST00000196324.1 ENSMUSP00000142746.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196324.1Link to Ensembl Protein Viewer:ENSMUSP00000142746.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196324Re-query CCDS DB by Protein ID:ENSMUSP00000142746
Original member Current member EBI ENSMUST00000198675.1 ENSMUSP00000143362.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198675.1Link to Ensembl Protein Viewer:ENSMUSP00000143362.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198675Re-query CCDS DB by Protein ID:ENSMUSP00000143362
Original member NCBI NM_178777.3 NP_848892.1 Updated not alive Link to Nucleotide Sequence:NM_178777.3Link to Protein Sequence:NP_848892.1Re-query CCDS DB by Nucleotide ID:NM_178777Re-query CCDS DB by Protein ID:NP_848892
Current member NCBI NM_178777.4 NP_848892.1 Accepted alive Link to Nucleotide Sequence:NM_178777.4Link to Protein Sequence:NP_848892.1Re-query CCDS DB by Nucleotide ID:NM_178777Re-query CCDS DB by Protein ID:NP_848892Link to BLAST:NP_848892.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848892.1 135 Q64221 135 100% 0 0

Chromosomal Locations for CCDS 17685.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 102012654 102013061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGATGCTGAGTCCGGACCAAGCCGCCGACTCAGATCACCCCAGCTCGACGCACTCGGACCCGGAGTCTC
TGGGCGGCGCAGACACCAAGGTTCTGGGCAGCGTGTCGGACCTAGAGCCAGTGGAGGAGGCGGACGGCGA
CGGCAAGGGAGGCAGCCGGGCCGCGCTCTACCCGCACCCGCAGCAGCTGAGCCGCGAAGAAAAGCGCCGC
CGCCGGCGCGCCACGGCCAAGTACCGATCGGCCCACGCCACCCGCGAGCGCATCCGAGTGGAGGCTTTCA
ACCTGGCCTTCGCCGAGCTCCGCAAACTACTACCCACGCTGCCTCCGGACAAGAAGCTCTCCAAGATCGA
GATTCTGCGCTTGGCCATCTGCTACATCTCCTATCTCAACCATGTCCTGGACGTGTAG

Translation (135 aa):
MMLSPDQAADSDHPSSTHSDPESLGGADTKVLGSVSDLEPVEEADGDGKGGSRAALYPHPQQLSREEKRR
RRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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