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Report for CCDS17228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17228.1 Public Mus musculus 3 Pex2 23 108 98 CCDS HistoryNCBI Gene:19302Re-query CCDS DB by CCDS ID:17228.1Re-query CCDS DB by GeneID:19302See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059021.9 ENSMUSP00000059415.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059021.9Link to Ensembl Protein Viewer:ENSMUSP00000059415.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059021Re-query CCDS DB by Protein ID:ENSMUSP00000059415
Original member Current member EBI ENSMUST00000071280.7 ENSMUSP00000071255.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071280.7Link to Ensembl Protein Viewer:ENSMUSP00000071255.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071280Re-query CCDS DB by Protein ID:ENSMUSP00000071255
Original member Current member EBI ENSMUST00000165309.7 ENSMUSP00000126445.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165309.7Link to Ensembl Protein Viewer:ENSMUSP00000126445.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165309Re-query CCDS DB by Protein ID:ENSMUSP00000126445
Original member Current member EBI ENSMUST00000164828.7 ENSMUSP00000129311.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164828.7Link to Ensembl Protein Viewer:ENSMUSP00000129311.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164828Re-query CCDS DB by Protein ID:ENSMUSP00000129311
Original member Current member EBI ENSMUST00000195855.5 ENSMUSP00000141927.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195855.5Link to Ensembl Protein Viewer:ENSMUSP00000141927.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195855Re-query CCDS DB by Protein ID:ENSMUSP00000141927
Original member Current member EBI ENSMUST00000191916.5 ENSMUSP00000141945.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191916.5Link to Ensembl Protein Viewer:ENSMUSP00000141945.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191916Re-query CCDS DB by Protein ID:ENSMUSP00000141945
Original member Current member NCBI NM_001163301.2 NP_001156773.1 Accepted alive Link to Nucleotide Sequence:NM_001163301.2Link to Protein Sequence:NP_001156773.1Re-query CCDS DB by Nucleotide ID:NM_001163301Re-query CCDS DB by Protein ID:NP_001156773Link to BLAST:NP_001156773.1
Original member Current member NCBI NM_001163302.2 NP_001156774.1 Accepted alive Link to Nucleotide Sequence:NM_001163302.2Link to Protein Sequence:NP_001156774.1Re-query CCDS DB by Nucleotide ID:NM_001163302Re-query CCDS DB by Protein ID:NP_001156774Link to BLAST:NP_001156774.1
Original member Current member NCBI NM_001163305.2 NP_001156777.1 Accepted alive Link to Nucleotide Sequence:NM_001163305.2Link to Protein Sequence:NP_001156777.1Re-query CCDS DB by Nucleotide ID:NM_001163305Re-query CCDS DB by Protein ID:NP_001156777Link to BLAST:NP_001156777.1
Original member Current member NCBI NM_001163306.2 NP_001156778.1 Accepted alive Link to Nucleotide Sequence:NM_001163306.2Link to Protein Sequence:NP_001156778.1Re-query CCDS DB by Nucleotide ID:NM_001163306Re-query CCDS DB by Protein ID:NP_001156778Link to BLAST:NP_001156778.1
Original member Current member NCBI NM_001267714.1 NP_001254643.1 Accepted alive Link to Nucleotide Sequence:NM_001267714.1Link to Protein Sequence:NP_001254643.1Re-query CCDS DB by Nucleotide ID:NM_001267714Re-query CCDS DB by Protein ID:NP_001254643Link to BLAST:NP_001254643.1
Original member Current member NCBI NM_001267715.1 NP_001254644.1 Accepted alive Link to Nucleotide Sequence:NM_001267715.1Link to Protein Sequence:NP_001254644.1Re-query CCDS DB by Nucleotide ID:NM_001267715Re-query CCDS DB by Protein ID:NP_001254644Link to BLAST:NP_001254644.1
Original member Current member NCBI NM_008994.4 NP_033020.2 Accepted alive Link to Nucleotide Sequence:NM_008994.4Link to Protein Sequence:NP_033020.2Re-query CCDS DB by Nucleotide ID:NM_008994Re-query CCDS DB by Protein ID:NP_033020Link to BLAST:NP_033020.2

Chromosomal Locations for CCDS 17228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 5560830 5561747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGACTGGCAAAGAAGAGAATATGCAGAGTGCAAACAGAGTGCTGAGGATAAGTCAGTTGGATGCACTTG
AACTGAATAAGGCCCTGGAGCAGCTTGTGTGGTCCCAGTTTACTCAGTGCTTTCATGGATTTAAGCCAGG
ACTGTTAGCTCGCTTTGAGCCAGAAGTGAAAGCATTTCTGTGGCTTTTCCTATGGAGGTTCACCATCTAC
TCCAAAAATGCCACTGTGGGGCAGTCAGTTTTAAATATTCAGTACAAAAATGATTCTTCTCTCAACCTGA
TATACCAGCCACCGAGTAAAACTCAGAAACTGTGGTATGCTGTGTGCACCATTGGGGGAAAGTGGTTAGA
AGAACGATGTTATGATTTGTTTCGAAACCGTCATTTAGCGTCTTTTGGGAAAGCCAAACAGTTCATGAAT
TTTCTGGTTGGACTTTTAAAATTAGGTGAGTTGATAAACTTCTTGATTTTCCTACAAAAGGGAAAGTTTG
CAACTTTGACAGAACGCCTCCTTGGCATTCATTCCGTATTTTGCAAGCCCCAGAACATGCGCGAAGTTGG
CTTTGAGTACATGAATAGGGAACTTCTCTGGCATGGCTTTGCTGAGTTTCTGATTTTTCTCTTACCACTT
ATCAATATCCAGAAGTTGAAAGCCAAATTGTCTTCCTGGTGTATCCCTCTTACTGGTGCTGCTGGTCATG
ACAGTACACTAGGCAGCAGTGGAAAAGAGTGTGCTCTGTGTGGAGAGTGGCCCACAATGCCTCACACTAT
TGGATGTGAACATGTATTTTGTTACTACTGTGTTAAGAGTAGCTTCCTATTTGACATATACTTTACGTGC
CCGAAGTGTGGCACAGAAGTGCACAGTGTGCAGCCCTTGAAATCAGGAATTGAAATGTCAGAAGTAAATG
CTCTTTAG

Translation (305 aa):
MTGKEENMQSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTIY
SKNATVGQSVLNIQYKNDSSLNLIYQPPSKTQKLWYAVCTIGGKWLEERCYDLFRNRHLASFGKAKQFMN
FLVGLLKLGELINFLIFLQKGKFATLTERLLGIHSVFCKPQNMREVGFEYMNRELLWHGFAEFLIFLLPL
INIQKLKAKLSSWCIPLTGAAGHDSTLGSSGKECALCGEWPTMPHTIGCEHVFCYYCVKSSFLFDIYFTC
PKCGTEVHSVQPLKSGIEMSEVNAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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