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Report for CCDS17181.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17181.2 Public Mus musculus 2 Tcfl5 23 108 98 CCDS HistoryNCBI Gene:277353Re-query CCDS DB by CCDS ID:17181.2Re-query CCDS DB by GeneID:277353See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 17181.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17181.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037877.10 ENSMUSP00000040611.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037877.10Link to Ensembl Protein Viewer:ENSMUSP00000040611.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000037877Re-query CCDS DB by Protein ID:ENSMUSP00000040611
Original member NCBI NM_178254.3 NP_839985.2 Updated not alive Link to Nucleotide Sequence:NM_178254.3Link to Protein Sequence:NP_839985.2Re-query CCDS DB by Nucleotide ID:NM_178254Re-query CCDS DB by Protein ID:NP_839985
Current member NCBI NM_178254.4 NP_839985.2 Accepted alive Link to Nucleotide Sequence:NM_178254.4Link to Protein Sequence:NP_839985.2Re-query CCDS DB by Nucleotide ID:NM_178254Re-query CCDS DB by Protein ID:NP_839985Link to BLAST:NP_839985.2

Chromosomal Locations for CCDS 17181.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180622592 180622714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180635254 180635395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180638404 180638647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180640301 180640463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180640881 180641064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180641976 180642589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGTCGGGCCCCGGGCCGCGGGAGCCGCCGCCTGAGGCGGGCGCGACGGGCGGCGAGGCGGGCCCCGAGG
GCGCGGGCGGCGGGGACGCGGCGCTGGGAGAGCCGGGGCTGAGCTTCACGACCACCGACCTGAGCCTGGT
GGAGATGACGGAAGTGGAGTACACGCAGCTGCAGCACATCCTCTACTCGCACATGGAGGCGGCGGACGGC
GAGCTCGAGGCGCGCCTGGGCTCCGCGCTGCTGGCCGGCCCGGGCGCGGGCTCGGGCGCGGCGGGCTCGC
TGGCGCCGGCGCCGCCCGTGTACCCAGTGCTGTGCCCGCCGCTGGCGGCCGACGCGCCGTGCCTGGGCCA
CGTCGACTTCCAGGAGCTGCGTATGATGCTGCTGGGCGAGGCGGGCGCGGCGGAGAAGACGCCCGGCGGT
GCGGACGGGACGCGGACGCGGGCGGACGGCGTGGCCAAGGAAGGCGCGGGCGGTGCGGGGCCCGACGGCG
CACCGGAGGCCCGGGCCAAGCCGACCGTACGCGTCCGTCTGGAGGACCGCTTCAACAGTATGCCGGCCGA
GCCGCCTGCGCCGCGCGGTGCTGAGCCCGCCGAGTCGGGCGTGGCGCTCAACAATTTGGTAACTCTTATT
CGACATCCATCTGAATTAATGAATGTTCCTCTTCACCAGCAACAAAACAAATGTACGACCTTAGTGAAAA
ATAAAACTGCTGCTGCCACTACTGCTTTGCAGTTCACCTACCCACTGTTTACAAGTGCCTGCTCCACTGG
TGGGAATGCCAGCCTTGCACAGACGCAGAGTTCTAGTAACTCATGCTCTATACTGGAAGCTGCCAAGCAC
CAGGATATTGGACTGCCTAGAGCATTTTCTTTCTGTTACCAGCAAGAGATTGAGTCCACCAAACAGACAG
GAGGTAGTAGAAACAAAGCCTTGCCGGAGCAGGTTTGGATTAAAGTGGGAGAAGCGCTATGTAAACAAGC
AATCAATAAGAGGAATCGGAGTAGAATCCGCCAGCTGGACACAAGCGTGGAGCGAAGAGCCCTTGGAGAG
ATTCAGAATGTAGGTGAAGGCTCTTCAACATCACAGGGCACCTGGCAGTCTTCAGAGTCCTCACAGTCAA
ACCTGGGGGAGCAGACGCAGAGCGGACCCCAGGGAGGAAGGTCTCAGCGTCGGGAGAGGCATAACCGAAT
GGAACGAGATAGGAGGCGCAGAATCCGCATTTGCTGTGATGAGCTGAATCTTTTAGTTCCATTCTGCAAT
GCGGAGACAGATAAAGCAACAACCCTTCAGTGGACCACAGCATTCCTGAAGTACATTCAGGAAAGACATG
GGGACTCTCTTAAAAAGGAATTTGAGAGCGTGTTTTGCGGTAAAACTGGCAGAAGGCTAAAGCTGACTAG
ACCCGAATCCCTGGTGACCTGCCCTGCACAGGGCAGCCTGCAGAGCAGCCCTGCCATGGAGATCAAGTGA

Translation (489 aa):
MSGPGPREPPPEAGATGGEAGPEGAGGGDAALGEPGLSFTTTDLSLVEMTEVEYTQLQHILYSHMEAADG
ELEARLGSALLAGPGAGSGAAGSLAPAPPVYPVLCPPLAADAPCLGHVDFQELRMMLLGEAGAAEKTPGG
ADGTRTRADGVAKEGAGGAGPDGAPEARAKPTVRVRLEDRFNSMPAEPPAPRGAEPAESGVALNNLVTLI
RHPSELMNVPLHQQQNKCTTLVKNKTAAATTALQFTYPLFTSACSTGGNASLAQTQSSSNSCSILEAAKH
QDIGLPRAFSFCYQQEIESTKQTGGSRNKALPEQVWIKVGEALCKQAINKRNRSRIRQLDTSVERRALGE
IQNVGEGSSTSQGTWQSSESSQSNLGEQTQSGPQGGRSQRRERHNRMERDRRRRIRICCDELNLLVPFCN
AETDKATTLQWTTAFLKYIQERHGDSLKKEFESVFCGKTGRRLKLTRPESLVTCPAQGSLQSSPAMEIK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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