NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16952.1 Public Mus musculus 2 Trpc4ap 23 108 98 CCDS HistoryNCBI Gene:56407Re-query CCDS DB by CCDS ID:16952.1Re-query CCDS DB by GeneID:56407See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103140.4 ENSMUSP00000099429.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103140.4Link to Ensembl Protein Viewer:ENSMUSP00000099429.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103140Re-query CCDS DB by Protein ID:ENSMUSP00000099429
Original member Current member NCBI NM_019828.2 NP_062802.2 Accepted alive Link to Nucleotide Sequence:NM_019828.2Link to Protein Sequence:NP_062802.2Re-query CCDS DB by Nucleotide ID:NM_019828Re-query CCDS DB by Protein ID:NP_062802Link to BLAST:NP_062802.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062802.2 789 Q9JLV2-2 789 100% 0 0

Chromosomal Locations for CCDS 16952.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155635003 155635140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155635236 155635442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155636196 155636308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155637658 155637766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155638048 155638188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155639473 155639563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155640474 155640557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155641589 155641690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155643392 155643450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155644928 155645059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155650419 155650561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155653493 155653678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155657736 155657943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155663657 155663785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155666202 155666257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155668412 155668469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155671040 155671156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155672990 155673118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155692139 155692306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2370 nt):
ATGGCGGCAGCGCCCGCAGCGGCTGGAGCTGGGGCCAGCCGGGGGAGGCGGTTGGCAGCTACCGCGGCGG
CGTGGGGCGGCTGGGGAGGTCGACCGCGGCCGGGTAACATCCTGCTGCAGCTGCGGCAGGGCCAGCTCAC
CGGCCGAGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACCTTTTTGACCGAGAGGGACAAATTGTCCAAA
TGGAGTGGAATTCCTCAGTTGCTCCTTAAGCTGTATGCCACCAGCCATCTGCACAGTGACTTCGTTGAGT
GCCAAAGCATTCTCAAGGAGATTTCTCCTCTTCTCTCTATGGAGGCTATGGCGTTTGTAACTGAAGACAG
GAAATTTACTCAAGAAGCTACATACCCAAATACATATATTTTTGACTTATTTGGAGGTGTTGATCTTCTT
GTAGAAATTCTTATGAGGCCTACCATCTCTATCCGGGGACAGAAACTAAAAATAAGTGACGAGATGTCGA
AGGACTGCTTGAGCATCCTGTACAATACCTGTGTCTGCACGGAAGGAGTAACGAAGCGTTTGGCAGAAAA
GAATGATTTTGTGATTTTTCTGTTCACACTGATGACAAGTAAGAAGACATTCTTACAAACAGCGACTCTC
ATTGAAGACATTTTGGGTGTTAAGAAGGAAATGATCCGGCTAGATGAAGTTCCCAATCTGAGTTCCTTAG
TATCCAATTTCGATCAGCAGCAGCTTGCTAACTTCTGCAGGATCCTGGCTGTCACCATTTCAGAGATGGA
CACGGGGAATGACGACAAACACACGCTTCTTGCCAAAAATGCTCAGCAGAAGAAGAGTTTGAGTTTGGGG
CCTTCTGCAGCTGAAATCAACCAAGCTGCTCTTCTCAGCATCCCTGGCTTTGTGGAACGGCTTTGCAAAC
TGGCAACTAGGAAAGTGTCAGAGTCAACGGGCACAGCCAGCTTCCTTCAAGAACTGGAGGAGTGGTACAC
ATGGCTCGACAATGCGTTGGTGCTAGATGCCCTGATGCGAGTGGCCAATGAGGAGTCTGAACACAATCAA
GGCACTTCGGAGGAGGGTGGGCTGCCACACACCTCGGCCAGGGCGCAGCTGCCCCAGTCCATGAAGATTA
TGCATGAGATTATGTACAAACTGGAAGTGCTTTATGTCCTCTGCGTGCTGCTGATGGGGCGTCAGCGAAA
CCAGGTCCACAGGATGATTGCTGAGTTCAAGTTGATCCCAGGACTCAATAATTTGTTCGACAAACTGATT
TGGAGGAAGCATTCAGCATCTGCCCTTGTCCTCCATGGCCACAACCAGAACTGTGACTGTAGCCCGGACA
TCACCTTGAAGATCCAGTTTTTGAGACTTCTCCAGAGTTTCAGTGACCACCATGAGAACAAGTACTTGCT
GCTCAACAACCAGGAGCTAAATGAGCTCAGTGCCATCTCGCTGAAAGCCAACATCCCTGAGGTGGAGGCT
GTCCTCAACACTGACAGGAGTCTGGTGTGTGACGGCAAGAGGGGCCTACTAACTCGGCTGCTGCAGGTCA
TGAAGAAGGAGCCAGCGGAGTCTTCATTCAGGTTTTGGCAAGCCCGGGCTGTGGAAAGTTTCCTCCGAGG
GACCACCTCCTATGCAGACCAGATGTTCCTGCTGAAGCGAGGCCTTCTGGAGCACATCTTATACTGCATT
GTGGACAGTGAGTGCAAGTCTAGGGATGTACTCCAGAGCTACTTTGATCTCCTGGGAGAGCTGATGAAGT
TCAACGTCGATGCATTCAAGAGATTCAATAAATATATCAACACTGATGCAAAGTTCCAGGTGTTCCTGAA
ACAGATCAACAGCTCGCTAGTGGACTCCAACATGCTGGTGCGCTGTGTCACTCTGTCACTGGACCGATTT
GAAAACCAGGTGGACATGAAAGTGGCCGAGGTCCTGTCCGAGTGCCGCCTGCTTGCCTACATATCCCAGG
TGCCCACGCAAATGTCCTTCCTCTTCCGCCTCATCAATATCATCCATGTGCAGACGCTAACCCAGGAGAA
CGTCAGCTGCCTCAACACCAGCCTGGTAATCCTGATGCTGGCCCGACGGAAAGAGCGGCTGCCCCTGTAC
CTGCGACTGCTACAGCGAATGGAGCACAGCAAGAAATACCCCGGCTTCCTGCTCAACAACTTCCACAACC
TGCTGCGCTTTTGGCAGCAGCACTACCTGCACAAGGATAAGGACAGCACCTGCCTGGAGAATAGCTCCTG
TATCAGCTTCTCGTACTGGAAGGAGACAGTGTCCATCTTGTTGAACCCAGACCGCCAGTCGCCCTCTGCC
CTCGTCAGCTACATTGAGGAGCCCTACATGGACATAGACAGAGACTTCACTGAGGAGTGA

Translation (789 aa):
MAAAPAAAGAGASRGRRLAATAAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKLSK
WSGIPQLLLKLYATSHLHSDFVECQSILKEISPLLSMEAMAFVTEDRKFTQEATYPNTYIFDLFGGVDLL
VEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATL
IEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLG
PSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQ
GTSEEGGLPHTSARAQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLI
WRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAISLKANIPEVEA
VLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGLLEHILYCI
VDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRF
ENQVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLY
LRLLQRMEHSKKYPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSA
LVSYIEEPYMDIDRDFTEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH