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Report for CCDS16925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16925.1 Public Mus musculus 2 Bpifa1 23 108 98 CCDS HistoryNCBI Gene:18843Re-query CCDS DB by CCDS ID:16925.1Re-query CCDS DB by GeneID:18843See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028985.7 ENSMUSP00000028985.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028985.7Link to Ensembl Protein Viewer:ENSMUSP00000028985.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028985Re-query CCDS DB by Protein ID:ENSMUSP00000028985
Original member Current member NCBI NM_011126.3 NP_035256.2 Accepted alive Link to Nucleotide Sequence:NM_011126.3Link to Protein Sequence:NP_035256.2Re-query CCDS DB by Nucleotide ID:NM_011126Re-query CCDS DB by Protein ID:NP_035256Link to BLAST:NP_035256.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035256.2 278 P97361 278 100% 0 0

Chromosomal Locations for CCDS 16925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 154143767 154144001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154144192 154144351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154145627 154145734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154146042 154146191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154147245 154147323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154147625 154147688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154148050 154148090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGTTTCTAGTTGGGAGCCTCGTTGTCCTCTGTGGGCTGCTGGCCCACAGCACAGCACAGCTGGCAGGCT
TGCCATTGCCCCTGGGCCAGGGTCCACCCTTGCCACTGAACCAGGGCCCACCGTTGCCACTGAACCAGGG
CCAGCTGTTGCCCCTGGCTCAGGGTCTGCCTTTGGCTGTAAGCCCAGCACTGCCTTCAAATCCCACAGAT
CTTCTTGCTGGAAAATTCACAGATGCTCTCAGCGGTGGCCTGCTGTCTGGGGGGCTGCTGGGCATTTTGG
AAAATATTCCACTCCTGGATGTTATAAAGTCTGGAGGAGGCAATTCTAATGGCCTTGTTGGGGGCCTGCT
GGGAAAACTGACGTCATCAGTTCCTCTCCTGAACAACATCCTCGACATAAAAATCACTGATCCGCAGCTG
CTAGAACTTGGTCTTGTGCAGAGTCCTGATGGCCATCGTCTCTATGTCACCATCCCTCTGGGCTTGACAC
TCAACGTAAATATGCCCGTAGTTGGAAGTCTTTTGCAATTGGCTGTGAAGCTGAACATTACTGCAGAAGT
CTTAGCCGTGAAAGACAATCAGGGGAGGATTCATCTGGTTCTTGGTGACTGCACCCACTCCCCTGGCAGC
CTGAAAATCAGCTTGCTCAATGGAGTCACTCCTGTTCAAAGCTTTTTAGACAACCTCACAGGGATATTGA
CTAAAGTCCTTCCTGAGCTGATCCAGGGCAAGGTATGTCCTCTGGTCAATGGGATTCTCAGCGGTTTGGA
TGTCACCCTGGTGCACAACATTGCTGAATTACTGATCCATGGACTACAGTTTGTCATCAAAGTTTAG

Translation (278 aa):
MFLVGSLVVLCGLLAHSTAQLAGLPLPLGQGPPLPLNQGPPLPLNQGQLLPLAQGLPLAVSPALPSNPTD
LLAGKFTDALSGGLLSGGLLGILENIPLLDVIKSGGGNSNGLVGGLLGKLTSSVPLLNNILDIKITDPQL
LELGLVQSPDGHRLYVTIPLGLTLNVNMPVVGSLLQLAVKLNITAEVLAVKDNQGRIHLVLGDCTHSPGS
LKISLLNGVTPVQSFLDNLTGILTKVLPELIQGKVCPLVNGILSGLDVTLVHNIAELLIHGLQFVIKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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