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Report for CCDS16817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16817.1 Public Mus musculus 2 Ovol2 23 108 98 CCDS HistoryNCBI Gene:107586Re-query CCDS DB by CCDS ID:16817.1Re-query CCDS DB by GeneID:107586See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037423.3 ENSMUSP00000044026.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037423.3Link to Ensembl Protein Viewer:ENSMUSP00000044026.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000037423Re-query CCDS DB by Protein ID:ENSMUSP00000044026
Original member Current member NCBI NM_026924.3 NP_081200.2 Accepted alive Link to Nucleotide Sequence:NM_026924.3Link to Protein Sequence:NP_081200.2Re-query CCDS DB by Nucleotide ID:NM_026924Re-query CCDS DB by Protein ID:NP_081200Link to BLAST:NP_081200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081200.2 274 Q8CIV7-1 274 100% 0 0

Chromosomal Locations for CCDS 16817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 144305603 144305919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144317711 144317900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144330904 144331121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144331761 144331860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGCCCAAAGTCTTTTTGGTGAAGAGGAGGAGCCCGGGAGTCTCTGTCCGCAGCTGGGATGAGCTCCCGG
ATGACAAAAGGGCAGACACTTACATCCCAGTGAGCCTGGGCTGTCTGCTCCGCGACCCGCCCGAAGACTG
CCGCAGCGACGGCGGCAGTAGCAGCGGCTGCAGCAGCAGCGCCGGGGAGCCCGGAGGGGCCGAAAGCAGC
TCGTCCCCGCGCGCGCCGGAGCCTGAAACTCCAGAGCTTCACGACGCCCAAGGCACCGATGGACATCTGG
CAGCGATGCAGCGCCCGGTTGCCAGGTCAAAAATCAAGTTTACCACCGGCACATGCGACAACTCTGTGAT
TCACAACTGTGACCTTTGTGGCAAGAGCTTCCGCCTGCAGCGCATGCTCAACCGTCACCTTAAGTGCCAC
AACCAGGTAAAGAGGCACCTGTGCACCTTCTGCGGCAAGGGCTTCAATGACACCTTCGACCTGAAGAGGC
ACGTACGCACGCACACTGGCATCCGCCCCTACAAATGTGAGGTGTGTAACAAGGCCTTCACCCAGCGGTG
TTCCTTGGAGTCCCACCTAAAGAAGATCCACGGGGTACAGCAGCAGTATGCCTACAAGCAGCGTCGCGAC
AAACTCTACGTGTGTGAGGATTGCGGCTACACGGGCCCCACCCAGGAGGACCTGTATCTGCATGTGAACA
GTGACCATCCAGGGAGCACATTTCTCAAAAAGACTTCCAAAAAGTTGGCGGCCCTTATGCAGAACAAGCT
GACGTCCCCGCTGCAGGAGAATTCCACCCTGAGTGAAGAGGAGGAAAAAAAGTGA

Translation (274 aa):
MPKVFLVKRRSPGVSVRSWDELPDDKRADTYIPVSLGCLLRDPPEDCRSDGGSSSGCSSSAGEPGGAESS
SSPRAPEPETPELHDAQGTDGHLAAMQRPVARSKIKFTTGTCDNSVIHNCDLCGKSFRLQRMLNRHLKCH
NQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKCEVCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRD
KLYVCEDCGYTGPTQEDLYLHVNSDHPGSTFLKKTSKKLAALMQNKLTSPLQENSTLSEEEEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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