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Report for CCDS16800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16800.1 Public Mus musculus 2 Sptlc3 23 108 98 CCDS HistoryNCBI Gene:228677Re-query CCDS DB by CCDS ID:16800.1Re-query CCDS DB by GeneID:228677See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16800.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047370.2 ENSMUSP00000048313.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047370.2Link to Ensembl Protein Viewer:ENSMUSP00000048313.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000047370Re-query CCDS DB by Protein ID:ENSMUSP00000048313
Original member Current member EBI ENSMUST00000110083.7 ENSMUSP00000105710.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110083.7Link to Ensembl Protein Viewer:ENSMUSP00000105710.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110083Re-query CCDS DB by Protein ID:ENSMUSP00000105710
Original member Current member NCBI NM_001356507.1 NP_001343436.1 Accepted alive Link to Nucleotide Sequence:NM_001356507.1Link to Protein Sequence:NP_001343436.1Re-query CCDS DB by Nucleotide ID:NM_001356507Re-query CCDS DB by Protein ID:NP_001343436Link to BLAST:NP_001343436.1
Original member Current member NCBI NM_175467.4 NP_780676.1 Accepted alive Link to Nucleotide Sequence:NM_175467.4Link to Protein Sequence:NP_780676.1Re-query CCDS DB by Nucleotide ID:NM_175467Re-query CCDS DB by Protein ID:NP_780676Link to BLAST:NP_780676.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343436.1 563 Q8BG54 563 100% 0 0
NP_780676.1 563 Q8BG54 563 100% 0 0

Chromosomal Locations for CCDS 16800.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 139494206 139494322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139537559 139537744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139546393 139546547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139547160 139547308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139566574 139566698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139568758 139568851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139581514 139581619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139589492 139589711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139595940 139596066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139625803 139625938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139631248 139631377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 139636668 139636814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGGCCAATCTGAACGACAGTGCTGTTACAAATGGGACTCTACACAATCCTAAGACCCAGCAAGGAAAAA
GGCAAAGCACTGGTTGTGTGAAAAATGGAATCTCAAAGGAAGCCCAGCAAAATAGGAAGGCATATGCTGA
GGATAAGCCAGTCTTTGAGCCCTACCAGGAAGCACCACTTTATGTCTACGTTTTAACTTACATGGGATAT
GGAATTGGAATCCTATTCGGCTATCTCAGAGACTTTATGAGAAACTGGGGAATTGAAAAATGCAATGCAG
CTGTAGAGCGAGAAGAACAAAAAGACTTTGTGCCGCTGTATCAGGACTTTGAGAACTTTTATAAGAGGAA
CCTTTACATGAGAATCAGAGACAGCTGGAGTCACACGGTCTGCAGTGCCCCAGAGCCTTACATGAATGTC
ATGGAGAAAGTGACTGATGACTATAACTGGACATTCAGGCATACTGGAAAAGTTATAGAAAATATCATCA
ACATGGCCTCCTACAACTACCTTGGGCTTGCAGGGAAATATGATGATTCGATGGTGAGAGTTAAGGATAC
TTTAGAAAAGTATGGTGTAGGTGTGGCCAGCACCAGAAATGAAATGGGTACCTTGGATATACACAAGGAG
TTGGAGGATCTCATGGCTGAGTTCTTGAATGTAGAAGCAGTGATGTCTTTTGGAATGGGATTCGCAACCA
ACGCAATGAATATCCCTGTATTTGTTGGAAAGGGATGCCTCATTTTAAGTGATGAGTTTAACCACACTTC
AGTCATCCTAGGATCTCGACTCTCAGGTGCAGTCATAAGACCCTTCAAACACAATAATGCAGAAAACCTA
GAGAAGCTCCTGAGAGAAGCTATCATCCGTGGCCAGCCTGGCACAGGGAGAGCTTGGAAAAAGATTCTCA
TCGTGGTAGAGGGCGTCTACAGCATGGAAGGTTCCATTGTGAACCTTGCCCAGATAGTGGCTCTAAAGAA
GAAATACAAGGCTTACCTGTACATTGATGAAGCTCACAGTATTGGCTGTACAGGCCCCACGGGACGAGGC
GTCAGAGAGTTATTTGGACTGGACCCTGAAGATATTGACGTATACATGGGTACATTCACCAAGAGCTTCT
CGGGCTCAGGAGGATATATAGGCGGGAAAAAGGAAATTGTGGATTATTTACGGATGCAGTCACATAGCAC
TACTTATGCTACATCCATGAGTCCCGTAGTAGCAGCACAACTCATCAGATCATTGAAGATAACTATGGGA
TATGAGGGGAACATTGGAGGTATGGAGAGAATACAGCAACTTAAGGAAAACATAAAATACTTCCGACGGC
GACTGAAAGAGATGGGATTCATCATCTATGGCAATGATTTCTCTCCGGTGATCCCTGTGCTCCTCTATAT
GCCCGCTAAAGTGTCTGCTTTCAGCAGATTTTTGCTTAAGAAAAAGATCTCAGTGGTGGTTGTTGGATTT
CCAGCTACTTCCCTGCCAGAAGGTCGGGCCAGGTTCAGCATGTCCTCTGCACATACTCGGGAGATGTTAG
ACACAGTTTTGGAAGTCGTTGATGAGCTCGGTGATCTCCTGAACGTGAAATATTTCCCACTCAAGAAATC
AGGGCGTGCTATACTCTACAATAAGGAGGGTTTTGACAATGAAGCAAGCTTTGAAGAGATGCACTCTGAA
CCGGAAGCCTAA

Translation (563 aa):
MANLNDSAVTNGTLHNPKTQQGKRQSTGCVKNGISKEAQQNRKAYAEDKPVFEPYQEAPLYVYVLTYMGY
GIGILFGYLRDFMRNWGIEKCNAAVEREEQKDFVPLYQDFENFYKRNLYMRIRDSWSHTVCSAPEPYMNV
MEKVTDDYNWTFRHTGKVIENIINMASYNYLGLAGKYDDSMVRVKDTLEKYGVGVASTRNEMGTLDIHKE
LEDLMAEFLNVEAVMSFGMGFATNAMNIPVFVGKGCLILSDEFNHTSVILGSRLSGAVIRPFKHNNAENL
EKLLREAIIRGQPGTGRAWKKILIVVEGVYSMEGSIVNLAQIVALKKKYKAYLYIDEAHSIGCTGPTGRG
VRELFGLDPEDIDVYMGTFTKSFSGSGGYIGGKKEIVDYLRMQSHSTTYATSMSPVVAAQLIRSLKITMG
YEGNIGGMERIQQLKENIKYFRRRLKEMGFIIYGNDFSPVIPVLLYMPAKVSAFSRFLLKKKISVVVVGF
PATSLPEGRARFSMSSAHTREMLDTVLEVVDELGDLLNVKYFPLKKSGRAILYNKEGFDNEASFEEMHSE
PEA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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