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Report for CCDS16570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16570.1 Public Mus musculus 2 Spred1 23 108 98 CCDS HistoryNCBI Gene:114715Re-query CCDS DB by CCDS ID:16570.1Re-query CCDS DB by GeneID:114715See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028829.12 ENSMUSP00000028829.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028829.12Link to Ensembl Protein Viewer:ENSMUSP00000028829.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028829Re-query CCDS DB by Protein ID:ENSMUSP00000028829
Original member NCBI NM_033524.3 NP_277059.1 Updated not alive Link to Nucleotide Sequence:NM_033524.3Link to Protein Sequence:NP_277059.1Re-query CCDS DB by Nucleotide ID:NM_033524Re-query CCDS DB by Protein ID:NP_277059
Current member NCBI NM_033524.4 NP_277059.1 Accepted alive Link to Nucleotide Sequence:NM_033524.4Link to Protein Sequence:NP_277059.1Re-query CCDS DB by Nucleotide ID:NM_033524Re-query CCDS DB by Protein ID:NP_277059Link to BLAST:NP_277059.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_277059.1 444 Q924S8-1 444 100% 0 0

Chromosomal Locations for CCDS 16570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 117121725 117121756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117152992 117153166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117163498 117163666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117164946 117164995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117171928 117172086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117175344 117175445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117177302 117177949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGAGCGAGGAGACGGCGACTTCTGACAACGATAATAGTTATGCACGAGTGCGAGCTGTGGTGATGACCA
GAGATGACTCAAGTGGTGGATGGCTACCACTCGGAGGGAGCGGACTGAGCAGCGTCACTGTCTTCAGAGT
CCCTCATCAGGAAGAGAATGGCTGTGCGGACTTTTTTATCCGTGGAGAGAGACTCAGAGACAAAATGGTG
GTTTTGGAATGTATGCTTAAGAAAGACCTCATCTATAATAAGGTCACTCCCACATTTCACCACTGGAAGA
TCGATGACAAGAAGTTTGGCCTTACCTTTCAGAGTCCTGCTGATGCCAGGGCTTTTGATCGAGGCATTCG
AAGAGCTATAGAGGATATATCTCTAGGGTGCCCAGCGTCAAAAACTGAGGCTGAAGGAGGAGATGATGAT
TTACAAACGACTGAAGAAGACACTTCCCGTTCCCTAGTGAAAGATCACTTTTTCCAGCAAGAGACAGTTG
TTACCAGTGAACCTTACAGAAGCTCAGACATAAGACCGTTACCCTTTGAAGATCTGAATGCCAGAAGAGT
CTACTTGCAAAGCCAAGTCAGCCAGATACCATTCAGTCAGCAAGGCCTAGACATTCAGAGCCGAAGTATG
GAATATGTACAGCGGCAAATATCTAAGGAATGTGGGAGCCTAAAGTCCCAAACTAGGGTCCCTTTGAAGT
CAATCAGACATGTCAGCTTTCAAGATGAGGATGAGATTGTTAGAATAAATCCTCGAGATATCTTAATACG
TCGATATGCAGACTACAGACATCCGGACATGTGGAAAAATGACTTGGAGAGAGATGATACTGACTCCAGT
GTTCCATTTTCTAAACAAGACAGTAAAAAGTCAGACTATCTCTACCACTGTGGGGATGAGACTAAGTTAA
GTTCTCTGAAAGACTCTGTGGTATTTAAGACACAGCCTCCCTCGTTAAAATTTAAGTCAAAACGAAGAAA
AGAGGATGGGGAACGTTCTCGCTGCGTATACTGCCAGGAAAGGTTTAATCATGAAGAAAACGCCAGGGGG
AAATGCCAGGACGCTCCAGATCCTGTTAAAAGATGCATATATCAAGTTAGCTGCATGCTCTGTGCTGAGA
GCATGCTATATCATTGTATGTCAGACTCAGAGGGAGACTTTTCTGATCCTTGTTCGTGTGACACTAGCGA
TGACAAGTTCTGCCTAAGGTGGTTAGCCCTGGTAGCTCTGTCTTTCATTGTACCATGTATGTGCTGCTAC
GTCCCTTTGAGAATGTGCCATCGCTGTGGTGAGGCATGCGGGTGCTGTGGTGGGAAACATAAGGCTGCTG
GGTGA

Translation (444 aa):
MSEETATSDNDNSYARVRAVVMTRDDSSGGWLPLGGSGLSSVTVFRVPHQEENGCADFFIRGERLRDKMV
VLECMLKKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIEDISLGCPASKTEAEGGDDD
LQTTEEDTSRSLVKDHFFQQETVVTSEPYRSSDIRPLPFEDLNARRVYLQSQVSQIPFSQQGLDIQSRSM
EYVQRQISKECGSLKSQTRVPLKSIRHVSFQDEDEIVRINPRDILIRRYADYRHPDMWKNDLERDDTDSS
VPFSKQDSKKSDYLYHCGDETKLSSLKDSVVFKTQPPSLKFKSKRRKEDGERSRCVYCQERFNHEENARG
KCQDAPDPVKRCIYQVSCMLCAESMLYHCMSDSEGDFSDPCSCDTSDDKFCLRWLALVALSFIVPCMCCY
VPLRMCHRCGEACGCCGGKHKAAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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