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Report for CCDS16413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16413.1 Public Mus musculus 2 Nup160 23 108 98 CCDS HistoryNCBI Gene:59015Re-query CCDS DB by CCDS ID:16413.1Re-query CCDS DB by GeneID:59015See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057481.6 ENSMUSP00000059289.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057481.6Link to Ensembl Protein Viewer:ENSMUSP00000059289.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000057481Re-query CCDS DB by Protein ID:ENSMUSP00000059289
Original member NCBI NM_021512.2 NP_067487.1 Updated not alive Link to Nucleotide Sequence:NM_021512.2Link to Protein Sequence:NP_067487.1Re-query CCDS DB by Nucleotide ID:NM_021512Re-query CCDS DB by Protein ID:NP_067487
Current member NCBI NM_021512.3 NP_067487.1 Accepted alive Link to Nucleotide Sequence:NM_021512.3Link to Protein Sequence:NP_067487.1Re-query CCDS DB by Nucleotide ID:NM_021512Re-query CCDS DB by Protein ID:NP_067487Link to BLAST:NP_067487.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067487.1 1402 Q9Z0W3-1 1402 100% 0 0

Chromosomal Locations for CCDS 16413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 90679409 90679508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90679772 90679883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90683922 90684132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90684973 90685195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90687294 90687372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90689106 90689220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90690067 90690225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90693053 90693130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90693832 90693929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90696640 90696724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90697860 90697928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90700116 90700199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90700413 90700583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90702013 90702112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90702381 90702546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90703059 90703186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90703811 90703971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90706923 90707056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90708133 90708203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90708823 90708982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90710033 90710102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90711945 90712043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90713774 90713893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90717594 90717689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90717814 90717908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90717999 90718095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90718188 90718293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90721190 90721350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90722030 90722090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90723337 90723447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90723612 90723735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90725602 90725703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90729679 90729820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90732781 90732906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90733106 90733210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90735415 90735504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4209 nt):
ATGGCGGCGGCGGGATCCCTGGAACGGAGCTTCGTGGAACTGAGCGGAGCTGAACGCGAAAGGCCCAGGC
ACTTTCGGGAATTCACAGTCTGCGACATTGGGACTGCAAGTGCCGCGTTTGGAACGGTGAAGTACAGTGA
GAGCGCTGGTGGCTTCTATTATGTGGAAAGTGGCAAGTTGTTCTCCATCACCAGGAACAGGTTCATTCAT
TGGAAGACTTCTGGGGATACATTGGAGCTGGTGGAAGAATCACTGGACTTAAATTTGTTGAATAATGCTG
TTCGCCTAAAATTCCAAAATTACAACATCTTACCCGGTGGGGTTCATGTCTCTGAGACTCAGAATCATGT
GATAATCTTAATATTAACCAATCAGACAGTGCACAGATTAATTTTACCACACCCTTCCCGTATGTACAGA
AGTGAGCTGGTAACTGAAAGTCAGATGCAGTCCATATTTACTGACATTGGAAAAGTTGATTTCAGAGATC
CTTGCAACTCTCAGTTAATTCCATCAGTACCTGGGCTGTCCCCGGGTTCCACCACGTCTGCAGCCTGGCT
TAGCAGCGATGGGGAGGCTCTGTTCGCTCTACCATCTGCTTCTGGCGGCATCTTCGTTCTTAAGCTGCCT
CCTTATGACGTACCTGGGATAGCATCAGTTGTGGAGCTGAAACAGAGTTCCGTGATGCAGCGATTACTCA
CAGGCTGGATGCCCACAGCTATAAGGGGTGATCATGGGCCTTCTGATCGTGCTCTGAGTCTCGCTGTTCA
TTGTGTGGAACATGATGCCTTTATTTTTGCCCTGTGTCAGGATCATAAACTTCGGATGTGGTCTTACAAG
GACCAAATGTGCCTGATGGTGGCTGACATGCTGGAATATGTCCCTGTAAACAAAGACCTTCGGCTCACTG
CAGGAACAGGACATAAATTACGGCTTGCGTATTCTCCTTCCATGGGGCTCTACCTAGGAATATATATGCA
TGCTCCAAAACGAGGACAGTTCTGCGTTTTCCAGTTGGTGAGCACTGAGAATAATCGCTATAGTTTAGAT
CACATTTCTTCCCTGTTCACTTCTCAGGAGACACTAGTCGATTTTGCCTTAACCTCAACGGATATCTGGG
CCCTGTGGCATGATGCTGAGAACCAAACAATTGTGAAATATATCAACTTCGAACATAATGTTGCAGGTCA
GTGGAATCCAGTGTTTATGCAGCCTCTACCAGAAGAAGAAATTGTCATCAGAGACGATCAAGACCCCAGA
GAAATGTATTTGCGGAGCCTTTTTACACCAGGACACTTCATAAATGCAGCTTTATGTAAAGCTTTACAGA
TTTTCTGCCGAGGTACCGAGAGGAACTTGGATCTTTCATGGAATGAACTAAAAAAGGAAATTACTTTAGC
TGTTGAAAATGAGCTCCAAGGAAGTGTGACGGAGTATGAATTCTCCCAGGATGAATTCCGCACTTTACAA
CAGGAATTCTGGTGCAAGTTCTATGCCTGCGTTCTCCAGTATCAGGAAGCCCTCTCCCACCCTCTTGCTC
TACATTTGAATCCTGTCACAAACATGGTGTGCCTTCTCAAGAAGGGGTATCTGTCTTTCCTGGTGCCATC
TTCCTTAGTAGATCATTTATATCTCCTGCCCGATGAGCACCTTTTGACAGAGGATGAGACGACCATATCA
GATGATGCAGATGTGGCACGGGACGTCTTATGTCTTATAAAATGCCTCCGGATGATTGGAGAGTCTGTTA
CCATGGACATGGCAGTTTTGATGGAAACCAGTTGTTACAACTTGCAATCTCCAGAGAAGGCTGCGGAACA
CATTTTGGAAGATTTGATCACTATTGATGTAGAAAATGTGATGGAAGACATTTGTAGTAAACTGCAAGAG
ATCAGAAACCCCGTCCATGCCATTGGACTTCTTATACGGGAAATGGATTATGAAACAGAAGTGGAAATGG
AAAAGGGGTTCGATCCAGCTCAGCCTTTGAACGTTCGAATGAATCTTTCCCAGCTCTATGGTAGTAGCAC
AGCAGGATATATTGTGTGTCGAGGTGTGTATAAAATTGCCAGCACTCGATTCCTGATCTGCCGAGACCTC
TTGATCTTGCAGCAGCTATTAACAAGGCTAGGAGATGCAGTGATCTTAGGAGCTGGTCAGCTCTTTCAAG
CTCAGCAAGACCTGCTGCATCGCACAGCTCCCCTGCTCTTGTCTTATTACCTCATTAAGTGGGCAAGTCA
GTGCTTGGCAACTGATGTCCCCGTTGACACACTGGAGTCTAATCTACAACATTTGTCAGTTCTGGAACTA
ACTGATTCTGGTGCCTTAATGGCAAATAAACTGGTATCTAGCCCTCAGACAATTATGGAGTTATTCTTCC
AAGAAGTTGCAAGAAAACAAATTATATCTCATCTCTTCTCTCAACCCAAAGCCCCTCTAAGCCAAACTGG
ATTGAATTGGCCTGAAATGATTACTGCAGTTACTGGTTATTTGTTGCAGCTTTTGTGGCCTAGCAACCCA
GGTTGTCTCTTTCTAGAATGTTTGATGGGGAATTGCCAGTATGTACAATTGCAGGATTATATCCAACTAC
TGCATCCCTGGTGTCAAGTCAATGTTGGGTCTTGTCGCTTTATGCTGGGACGGTGTTACCTGGTTACGGG
GGAAGTGCAGAAGGCTCTGGAATGTTTCTGTCAGGCAGCATCTGAAGTGGGCAAAGAAGAATTTTTAGAT
CGCTTGATCCGATCAGAGGACGGGGAGATTGTGTCCACCCCCAAGTTGCAGTATTATGATAAGGTTTTAC
GTCTACTAGACGTTGTTGGATTGCCTGAGCTGGTTATTCAGCTTGCTACATCAGCAATTACTGAAGCAGG
TGATGACTGGAAAAGTCAGGCTACTTTAAGAACATGCATTTTCAAACATCATTTGGACTTGGGTCATAAT
AGCCAAGCATATGAGGCCTTGACCCAAATTCCGGACTCCAGCAGGCAGTTAGACTGTTTGCGACAGCTGG
TGGTGGTTCTATGTGAACGCTCCCAACTGCAGGATCTTGTAGAGTTTCCCTATGTGAATCTGCATAATGA
GGTTGTAGGAATAATTGAATCACGTGCTAGAGCTGTGGACCTTATGACTCACAATTACTATGAACTTCTT
TATGCTTTTCACATTTACCGCCATAATTACCGAAAAGCTGGTACAGTGATGTTTGAATATGGTATGCGTC
TTGGCAGAGAGGTACGAACTCTTCGGGGACTTGAGAAGCAAGGCAACTGTTACCTAGCCGCTATCAATTG
TTTACGGCTTATTCGTCCAGAGTATGCGTGGATCGTACAGCCAGCCTCTGGGGCAGTGTCTGATCGCCCT
GGAGCATCTCCTAAGCGGAATCATGATGGCGAGTGCACAGCTGCCCCAACCAATCGGCAAATTGAAATTC
TGGAATTGGAAGATCTCGAGAAAGAATATTCTTTAGCTCGCATTCGCCTCACGTTGGCTCGGCATGATCC
ATCAGTGATTGCCATTGCAGGAAGTTCATCAGCAAAGGAGATGAGCGCACTCTTGGTTCAGGCTGGCCTC
TTTGATACTGCCATATCACTCTGTCAGACTTTTACTCTTCCATTAACACCAGTCTTTGAAGGGCTTGCTT
TCAAGTGCATTAAGTTGCAGTTTGGAGGAGAAGCAGCACAAGGAGAAGCGTGGTCCTGGCTAGCAACCAA
TCAGCTGTCGTCTGTCATCACCACCAAGGAGTCCAGTGCTACAGATGAAGCATGGAGGCTATTGTCAACT
TACTTGGAAAGATACAAAGTCCAGAATAACTTGTATCATCATTGTGTGATTAACAAGTTGTTGTCTCATG
GAGTTCCTCTGCCTAATTGGCTTATAAACAGTTACAAGAAGGTTGATGCTGCCGAGTTGCTTCGTCTTTA
CCTGAACTATGACCTTTTAGAAGAAGCTGTGGATTTGGTCTCTGAATATGTAGATGCTGTATTAGGAAAA
GGACATCAGTACTTTGGAATTGAGTTTCCACTGTCAGCAACAGCCCCGATGGTATGGCTCCCATACTCTT
CTATTGACCAGCTTCTCCAGGCTCTGGGAGAGAACAGTGCCAACAGTCACAACATTATACTGTCCCAGAA
AATTCTTGACAAACTAGAAGACTACCAGCAAAAAGTTGACAAGGCAACGCGAGATTTACTGTACCGTCGG
GACTTGTGA

Translation (1402 aa):
MAAAGSLERSFVELSGAERERPRHFREFTVCDIGTASAAFGTVKYSESAGGFYYVESGKLFSITRNRFIH
WKTSGDTLELVEESLDLNLLNNAVRLKFQNYNILPGGVHVSETQNHVIILILTNQTVHRLILPHPSRMYR
SELVTESQMQSIFTDIGKVDFRDPCNSQLIPSVPGLSPGSTTSAAWLSSDGEALFALPSASGGIFVLKLP
PYDVPGIASVVELKQSSVMQRLLTGWMPTAIRGDHGPSDRALSLAVHCVEHDAFIFALCQDHKLRMWSYK
DQMCLMVADMLEYVPVNKDLRLTAGTGHKLRLAYSPSMGLYLGIYMHAPKRGQFCVFQLVSTENNRYSLD
HISSLFTSQETLVDFALTSTDIWALWHDAENQTIVKYINFEHNVAGQWNPVFMQPLPEEEIVIRDDQDPR
EMYLRSLFTPGHFINAALCKALQIFCRGTERNLDLSWNELKKEITLAVENELQGSVTEYEFSQDEFRTLQ
QEFWCKFYACVLQYQEALSHPLALHLNPVTNMVCLLKKGYLSFLVPSSLVDHLYLLPDEHLLTEDETTIS
DDADVARDVLCLIKCLRMIGESVTMDMAVLMETSCYNLQSPEKAAEHILEDLITIDVENVMEDICSKLQE
IRNPVHAIGLLIREMDYETEVEMEKGFDPAQPLNVRMNLSQLYGSSTAGYIVCRGVYKIASTRFLICRDL
LILQQLLTRLGDAVILGAGQLFQAQQDLLHRTAPLLLSYYLIKWASQCLATDVPVDTLESNLQHLSVLEL
TDSGALMANKLVSSPQTIMELFFQEVARKQIISHLFSQPKAPLSQTGLNWPEMITAVTGYLLQLLWPSNP
GCLFLECLMGNCQYVQLQDYIQLLHPWCQVNVGSCRFMLGRCYLVTGEVQKALECFCQAASEVGKEEFLD
RLIRSEDGEIVSTPKLQYYDKVLRLLDVVGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHN
SQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELL
YAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAAINCLRLIRPEYAWIVQPASGAVSDRP
GASPKRNHDGECTAAPTNRQIEILELEDLEKEYSLARIRLTLARHDPSVIAIAGSSSAKEMSALLVQAGL
FDTAISLCQTFTLPLTPVFEGLAFKCIKLQFGGEAAQGEAWSWLATNQLSSVITTKESSATDEAWRLLST
YLERYKVQNNLYHHCVINKLLSHGVPLPNWLINSYKKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGK
GHQYFGIEFPLSATAPMVWLPYSSIDQLLQALGENSANSHNIILSQKILDKLEDYQQKVDKATRDLLYRR
DL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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