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Report for CCDS16219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16219.1 Public Mus musculus 2 Or9g8 23 108 98 CCDS HistoryNCBI Gene:258562Re-query CCDS DB by CCDS ID:16219.1Re-query CCDS DB by GeneID:258562See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076250.1 ENSMUSP00000075600.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076250.1Link to Ensembl Protein Viewer:ENSMUSP00000075600.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000076250Re-query CCDS DB by Protein ID:ENSMUSP00000075600
Original member Current member EBI ENSMUST00000213453.2 ENSMUSP00000150352.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213453.2Link to Ensembl Protein Viewer:ENSMUSP00000150352.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213453Re-query CCDS DB by Protein ID:ENSMUSP00000150352
Original member Current member NCBI NM_146569.2 NP_666780.2 Accepted alive Link to Nucleotide Sequence:NM_146569.2Link to Protein Sequence:NP_666780.2Re-query CCDS DB by Nucleotide ID:NM_146569Re-query CCDS DB by Protein ID:NP_666780Link to BLAST:NP_666780.2

Chromosomal Locations for CCDS 16219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85776586 85777503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGAACAATATAATGATACAGTGACTGAGTTCATCCTGGTAGGATTCACAACAAACCCTGTCATGCAGC
TGGTTCTGCTTGTTATTTTTCTTGCTGTGTATGCATTAACTGTGTTAGGAAACAGCACCCTCATTGTGTT
GATCTGCAATGACTCTAGGCTCCATACACCCATGTATTTCTTCATTGGAAATCTGTCTTTTCTGGATCTT
GGATTGTCCACAGTCTATACACCAAAGATCTTAGTGACCTGCATCTCTGAAGATAAAAGCATCTCCTTTT
CTGGCTGTGTGGCTCAGTTCTTCTTCTCTGCTGGACTTGGGTATACTGAGTGTTATCTGTTGGCTGCCAT
GGCTTATGACCGCTATGTCGCTATCTCAAAGCCACTGCTTTATTCCCAAGCCATGTCCTTAAAGCTATGT
GCATTTTTAGTTGGAGTCTCATATTTGGGTGGTTTAATTAACTCTTTCATAATCACCAAAGACACATTTG
CCTTGACTTTCTGCAATGATAATGTAATTGATGACTTTTTCTGTGATATCCCACCCCTGGTAAAGCTCTC
ATGTGGCAAAAAGAAGAGCTTTCAGTCTGTGTTATTCTTCCTTTTGACTTCCAATGTCATCATCCCCATT
GTGTTCATCCTGGCCACCTATCTCTTCATCATTGCCACTATCTTGAGGATCCGCTCCACTCAGGGCCGCC
TCAAGGCCTTCTCCACCTGCTCCTCCCACCTCATCTCTGTGACCTTGTACTATGGCTCCATTCTCTACAT
CTATGCTCGGCCCCGGTCCAGCTACTCTTTAGATAGAGACAAAATTGTTTCAACCTTTTACACAGTGGTT
TTCCCCATGTTGAATCCCCTGATCTATAGTCTGAGGAATAAGGATGTGAAAGAGGCTTTGAGTAAACTGT
TCAAATAA

Translation (305 aa):
MEQYNDTVTEFILVGFTTNPVMQLVLLVIFLAVYALTVLGNSTLIVLICNDSRLHTPMYFFIGNLSFLDL
GLSTVYTPKILVTCISEDKSISFSGCVAQFFFSAGLGYTECYLLAAMAYDRYVAISKPLLYSQAMSLKLC
AFLVGVSYLGGLINSFIITKDTFALTFCNDNVIDDFFCDIPPLVKLSCGKKKSFQSVLFFLLTSNVIIPI
VFILATYLFIIATILRIRSTQGRLKAFSTCSSHLISVTLYYGSILYIYARPRSSYSLDRDKIVSTFYTVV
FPMLNPLIYSLRNKDVKEALSKLFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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