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Report for CCDS16213.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16213.1 Public Mus musculus 2 Or5g26 23 108 98 CCDS HistoryNCBI Gene:27216Re-query CCDS DB by CCDS ID:16213.1Re-query CCDS DB by GeneID:27216See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16213.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099918.4 ENSMUSP00000097502.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099918.4Link to Ensembl Protein Viewer:ENSMUSP00000097502.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099918Re-query CCDS DB by Protein ID:ENSMUSP00000097502
Original member Current member NCBI NM_013728.2 NP_038756.2 Accepted alive Link to Nucleotide Sequence:NM_013728.2Link to Protein Sequence:NP_038756.2Re-query CCDS DB by Nucleotide ID:NM_013728Re-query CCDS DB by Protein ID:NP_038756Link to BLAST:NP_038756.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038756.2 318 Q9QY00 318 100% 0 0

Chromosomal Locations for CCDS 16213.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85663476 85664432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGATGCACAGAAATCAAACTGTTGTGACTGAGTTCTTCTTCACTGGATTAACCTCCTCCTTCCATCTCC
AAATTGTCCTCTTCCTGACATTTCTCTGTGTTTATCTCGCAACTCTTCTGGGGAACCTGGGAATGATCAT
TCTTATTCACCTGGACACTCGACTCCACATCCCCATGTACTTTTTTCTCAGCCACTTGTCCTTTGTGGAT
GCCTGCTCCTCTTCTGTCATAAGTCCTAAGATGTTGTCTGACATGTTTGTGGATAAAAAGGTGATCTCCT
TCTTAGGTTGTGCTATCCAGCTTTGTTTATTTAGCCAGTTTGTAGTGACAGAATGTTTCCTCCTGGCCTC
CATGGCTTATGATCGGTATGTTGCCATCTGTAAGCCTTTGCTGTATACTCTCATCATGTCCCAGCGAGTC
TGTGTACAGTTAGTGATTGGCCCTTACAGCATAGGCTTTGTAAGCACTATGGTCCATATTATTTCTGCAT
TTGTCCTTCCATACTGTGGTCCAAATCTCATCAATCACTTTTTCTGTGACCTTCTTCCTGTCCTCTCACT
GGCATGTGCAAATACTCAGATGAAAAAACGTTTGCTTTTCATCGTGGCTGGGATCCTAGGTGTATTCAGT
GGTATAATCATATTGGTGTCCTATGTTTACATTGCCATCACCATCCTAAAGATCAGTTCTGCTGATGGGA
GGCGCAAAGCCTTCTCCACCTGCTCTTCACACCTGACAGCAGTCTCTATTCTTTACGGGACTCTCTTCTT
TATCTATGTACGTCCAAGCTCCAGCTTCTCTCTGGATATCAATAAGGTTGTGTCACTATTTTATACCACT
GTTATCCCTATGTTGAACCCATTCATTTATAGCCTGAGAAATAAGGAAGTCAAAGATGCATTAATCAGGA
CATTTGAAAAGCAGTTTTGCTACAGCTTTCAAGATAAAATACTATAA

Translation (318 aa):
MMHRNQTVVTEFFFTGLTSSFHLQIVLFLTFLCVYLATLLGNLGMIILIHLDTRLHIPMYFFLSHLSFVD
ACSSSVISPKMLSDMFVDKKVISFLGCAIQLCLFSQFVVTECFLLASMAYDRYVAICKPLLYTLIMSQRV
CVQLVIGPYSIGFVSTMVHIISAFVLPYCGPNLINHFFCDLLPVLSLACANTQMKKRLLFIVAGILGVFS
GIIILVSYVYIAITILKISSADGRRKAFSTCSSHLTAVSILYGTLFFIYVRPSSSFSLDINKVVSLFYTT
VIPMLNPFIYSLRNKEVKDALIRTFEKQFCYSFQDKIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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