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Report for CCDS16061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16061.1 Public Mus musculus 2 Tank 23 108 98 CCDS HistoryNCBI Gene:21353Re-query CCDS DB by CCDS ID:16061.1Re-query CCDS DB by GeneID:21353See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16061.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078074.8 ENSMUSP00000077219.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078074.8Link to Ensembl Protein Viewer:ENSMUSP00000077219.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000078074Re-query CCDS DB by Protein ID:ENSMUSP00000077219
Original member Current member NCBI NM_011529.2 NP_035659.1 Accepted alive Link to Nucleotide Sequence:NM_011529.2Link to Protein Sequence:NP_035659.1Re-query CCDS DB by Nucleotide ID:NM_011529Re-query CCDS DB by Protein ID:NP_035659Link to BLAST:NP_035659.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035659.1 448 P70347-1 448 100% 0 0

Chromosomal Locations for CCDS 16061.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 61578641 61578693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61613651 61613798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61626903 61627014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61627721 61627839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61643715 61643785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61644307 61644422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61649738 61650288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61653379 61653555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGTCTTTAAAGAGACATAGTCTGCGAAGGAACGCCTGTCACCTGGAGACGAGAGCTGGCATTCCTACCA
TCCTTTATAGTGATGCTACAGGACAAAGAGGAATGGATAAAAACATTGGTGAGCAACTCAATAGAGCATA
TGAAGCCTTCCGACAGGCATGCATGGATAGAGATTCAGCAGTAAGAGAGCTACAGCAAAAGCAGACTGAG
AACTATGAACAAAGAATACGCGAGCAACAGGAACAGCTGTCATTTCAACAAAACCTAATTGACAGGCTGA
AATCACAGCTACTTCTCGTGGATTCTAGTCGAGATAACAGTTATGGCTATGTACCTTTGCTTGAAGACAG
TGACAGAAGGAAGAATAATTTGACCCTTGATGAACCACATGATAAAGTGAAACTAGGAACACTGAGAGAT
AAGCAATCAAAGGTGAGACGACAAGAAGTTTCTTCTGGAAAAGAATCCGCCAAGGGTCTCAACATCCCTC
TGCATCACGAAAGGGATAATATAGAGAAGACTTTCTGGGACCTTAAAGAAGAATTTCATAGGATTTGCTT
GCTAGCAAAAGCACAGAAAGATCACTTAAGCAAACTTAATATACCAGATATTGCAACTGACACACAGTGT
TCTGTGCCTATACAGTGTACTGATAAAACAGAGAAACAAGAAGCGCTGTTTAAGCCCCAGGCTAAAGATG
ATATAAATAGAGGTATGTCGTGCGTCACAGCTGTCACACCAAGAGGACTGGGCCGGGATGAGGAAGATAC
CTCTTTTGAATCACTTTCTAAATTCAATGTCAAGTTTCCGCCTATGGACAATGACTCTATTTTTCTACAT
AGCACTCCAGAGGCCCCGAGCATCCTTGCTCCTGCCACACCTGAGACAGTGTGCCAGGACCGATTTAATA
TGGAAGTCAGAGACAACCCAGGAAACTTTGTTAAAACAGAAGAAACTTTATTTGAAATTCAGGGAATTGA
CCCCATAACTTCAGCTATACAAAACCTTAAAACAACTGACAAAACAAACCCCTCAAATCTTAGAGCGACG
TGTTTGCCAGCTGGAGACCACAATGTGTTCTATGTAAATACGTTCCCACTTCAAGACCCGCCTGACGCAC
CTTTTCCCTCACTGGATTCCCCAGGAAAGGCTGTCCGAGGACCACAGCAGCCCTTTTGGAAGCCTTTTCT
TAACCAAGACACTGACTTAGTGGTACCAAGTGATTCAGACTCAGAGCTCCTTAAACCTCTAGTGTGTGAA
TTCTGTCAAGAGCTTTTCCCACCATCCATTACATCCAGAGGGGATTTCCTCCGGCATCTTAATACACACT
TTAATGGGGAGACTTAA

Translation (448 aa):
MSLKRHSLRRNACHLETRAGIPTILYSDATGQRGMDKNIGEQLNRAYEAFRQACMDRDSAVRELQQKQTE
NYEQRIREQQEQLSFQQNLIDRLKSQLLLVDSSRDNSYGYVPLLEDSDRRKNNLTLDEPHDKVKLGTLRD
KQSKVRRQEVSSGKESAKGLNIPLHHERDNIEKTFWDLKEEFHRICLLAKAQKDHLSKLNIPDIATDTQC
SVPIQCTDKTEKQEALFKPQAKDDINRGMSCVTAVTPRGLGRDEEDTSFESLSKFNVKFPPMDNDSIFLH
STPEAPSILAPATPETVCQDRFNMEVRDNPGNFVKTEETLFEIQGIDPITSAIQNLKTTDKTNPSNLRAT
CLPAGDHNVFYVNTFPLQDPPDAPFPSLDSPGKAVRGPQQPFWKPFLNQDTDLVVPSDSDSELLKPLVCE
FCQELFPPSITSRGDFLRHLNTHFNGET


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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