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Report for CCDS15961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15961.1 Public Mus musculus 2 Stom 23 108 98 CCDS HistoryNCBI Gene:13830Re-query CCDS DB by CCDS ID:15961.1Re-query CCDS DB by GeneID:13830See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028241.6 ENSMUSP00000028241.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028241.6Link to Ensembl Protein Viewer:ENSMUSP00000028241.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028241Re-query CCDS DB by Protein ID:ENSMUSP00000028241
Original member Current member NCBI NM_013515.2 NP_038543.1 Accepted alive Link to Nucleotide Sequence:NM_013515.2Link to Protein Sequence:NP_038543.1Re-query CCDS DB by Nucleotide ID:NM_013515Re-query CCDS DB by Protein ID:NP_038543Link to BLAST:NP_038543.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038543.1 284 P54116 284 100% 0 0

Chromosomal Locations for CCDS 15961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 35315861 35316055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35320331 35320465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35321483 35321686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35323664 35323746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35325314 35325386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35326421 35326524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35336859 35336919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGTCTGACAAACGGCAGTCCAGCCATGTCCAGTCTCAGCGGATCCCTGAGTCCTTCAGAGAAAATTCCA
AGACAGAACTGGGAGCTTGTGGATGGATTTTGGTGGCTGCCTCGTTCTTTTTCGTAATTATAACCTTCCC
AATATCAATATGGATTTGCATAAAGATTGTAAAAGAGTATGAGAGAGTCATCATCTTTAGACTGGGTCGC
ATTTTGCAAGGAGGCGCCAAAGGACCAGGTTTGTTTTTTATCCTGCCGTGCACTGACAGCCTCATCAAGG
TGGACATGAGGACCATCTCCTTTGACATTCCTCCGCAGGAGGTCCTCACTAAGGACTCGGTGACAATCAG
TGTGGATGGTGTGGTCTACTACCGTGTTCAGAACGCAACCCTGGCTGTGGCCAATATCACCAATGCAGAT
TCAGCAACCCGTCTTTTGGCACAAACTACCCTCAGGAATGCGCTGGGCACCAAGAACCTGTCTCAAATCC
TCTCTGACAGAGAAGAGATTGCACACCACATGCAGAGTACGCTGGACGATGCCACGGATGACTGGGGGAT
CAAGGTGGAGCGGGTGGAGATTAAGGACGTGAAGCTGCCAGTGCAGCTCCAGAGAGCCATGGCTGCAGAG
GCAGAAGCCGCCCGGGAGGCTAGGGCCAAGGTGATTGCAGCTGAAGGGGAAATGAATGCGTCCAGAGCTC
TGAAAGAAGCGTCCATGGTTATCACCGAGTCTCCTGCCGCCCTTCAGCTTCGATACCTTCAAACCCTGAC
CACTATCGCTGCAGAGAAAAACTCCACCATTGTCTTCCCTCTGCCCGTCGACATGTTGCAGGGCATCATG
GGTTCTAATCACTGA

Translation (284 aa):
MSDKRQSSHVQSQRIPESFRENSKTELGACGWILVAASFFFVIITFPISIWICIKIVKEYERVIIFRLGR
ILQGGAKGPGLFFILPCTDSLIKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNAD
SATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAE
AEAAREARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPVDMLQGIM
GSNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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