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Report for CCDS15928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15928.1 Public Mus musculus 2 Sh2d3c 23 108 98 CCDS HistoryNCBI Gene:27387Re-query CCDS DB by CCDS ID:15928.1Re-query CCDS DB by GeneID:27387See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15928.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074248.10 ENSMUSP00000073866.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074248.10Link to Ensembl Protein Viewer:ENSMUSP00000073866.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074248Re-query CCDS DB by Protein ID:ENSMUSP00000073866
Original member NCBI NM_013781.3 NP_038809.1 Updated not alive Link to Nucleotide Sequence:NM_013781.3Link to Protein Sequence:NP_038809.1Re-query CCDS DB by Nucleotide ID:NM_013781Re-query CCDS DB by Protein ID:NP_038809
Current member NCBI NM_013781.4 NP_038809.1 Accepted alive Link to Nucleotide Sequence:NM_013781.4Link to Protein Sequence:NP_038809.1Re-query CCDS DB by Nucleotide ID:NM_013781Re-query CCDS DB by Protein ID:NP_038809Link to BLAST:NP_038809.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038809.1 854 Q9QZS8-1 854 100% 0 0

Chromosomal Locations for CCDS 15928.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32721159 32721195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32724937 32725399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32737519 32737558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32744751 32744879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32745835 32746289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32747022 32747146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32749153 32749685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32750952 32751067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32751514 32751685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32752614 32752725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32752989 32753195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32754396 32754571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2565 nt):
ATGACAGAGATGCCCAAGAAAACAGGCAGAAAGTTCAAGTTCTTCAAGTTCAAGGGCCTTGGGAGCCTTT
CCAATCTCCCGCGGTCCTTTTCTCTGAGACGGTCTTCAGCCTCTGCTAGTATCCGGTCTTGTCCGGAGCC
TGACACCTTTGAAGCCACACAGGATGACATGGTGACACTCCCAAAGAGTCCTCCTGCCTATGCACGTTCT
AGTGACATGTACAGCCACATGGGTACCATGCCCCGCCCTAACATCAAGAAGGCTCAGAAACAACAGGCTG
TCCAGAAGGCCCAGGAGGTCAGCCGAGAGTCGCACCTGGTTTCTCGAAGGCTGCCAGAGCCACCAGACTT
AGAGGCAGCCAAGGAGGCAGGGGAGGGAACTGAAGCCCTACTGGAGGACACGGCACCTTCAGCAGTAGAA
GTGGACCCTATGAGGGAACTGGAGGATCTCACAGTAGACACAGAGAAGGAGCAAGTCCCTGGGGATGTGA
GCCCAGAAAGGACTGCTGCAGAGCTGGAGGCCGCTGGGGACTATGTGAAGTTCTCCAAGGAGAAGTACAT
TCTTGACTCCTCGCCAGAGAAACTGCACAAGGAGCTGGAAGAGGAACTGAAGCTCAGCAGCACGGACCTC
CGTAGCCATGCCTGGTACCACGGACGCATCCCTCGTGAGGTCTCTGAGACTCTGGTGCAGCGGAACGGCG
ACTTCCTCATCCGAGACTCACTCACCAGCCTAGGGGACTATGTGCTCACGTGCCGCTGGCACAATCAGGC
CTTGCACTTCAAGATCAACAAGGTGGTGGTGAAGGCCGGAGAGAGCTACACCCACATCCGGTACCTCTTC
GAGCAGGAGAGCTTCGACCACGTGCCTGCCCTCGTGCGCTACCACGTGGGCAGCCGTAAGGCCGTGTCCG
AACAGAGCGGGGCTATCATCTACTGCCCTGTCAACCGCACCTTCCCACTGCGCTACCTCGAGGCCAGCTA
TGGCCTGAGCCAGGGCAGCAGCAAGACTGCCAGCCCAGCCAGCCCCTCAGGCTCCAAGGGCAGCCACATG
AAGAGGCGAAGCATTACCATGACTGATGGACTCACCACTGACAAGGTCACCCGCAGCGATGGCTGCCCCA
ACAGCACCTCATTACCCCATCCTCGAGACTCCATCCGAAACTGTGCCCTCAGCATGGACCAGATCCCAGA
TCTCCACTCACCCCTGTCTCCTATCTCCGAGAGCCCCAGCTCTCCTGCCTATAGCACTGTAACCCGAGTC
CATGCTCCTTCTGCCACCCCCTCTACTTCAGCACAGCCTGCCTCCCCAGTTGCCCGCCGCTCCAGCGAAC
CTCAGCTATGTCCTGGAAATACTCCAAAGCCTCCTGGGGAGTCAGACAGGGCCCCTCACGCAAGCCCATC
CCACACCCTCTGCAAGGCCTCGCCATCACCATCACTCAGCAGCTACAGTGACCCGGACTCTGGTCACTAC
TGTCAGCTCCAGCCTCCGGTCCGTGGCAGCCGAGAGCAGGCCGCAGGAGAGACTCCCCGGAAGGCTAGGG
GCTCCGGAGAGAGGCAAAAGGAACTGTTAGAAAATGGAGTCTCTGACGGGGAGTGGGGCAAGACCTTCAC
AGTCCCTGTAGTAGAAGCCACCTCCTCTTTCAACCTGGCTACCTTCCAGTCCCAGCTGATCCCCAAGGAG
AACCGGCCTCTGGAGGTGGCCCTTCTGCGCAAGGTCAAGGAGCTGCTGTCTGAGGTGGATGCCCGGACAC
TGGCCCGGCATGTCACCAAGGTTGACTGCCTGGTTGCTAGGATACTGGGCGTTACCAAGGAGATGCAGAC
CCTAATGGGAGTCCGCTGGGGCATGGAGCTGCTCACCCTCCCCCATGGCCGGCAGCTACGACTAGACCTG
CTGGAAAGGTTCCACACCATGTCCATCATGCTGGCAGTGGATATCCTGGGCTGCACAGGCTCGGCGGAGG
AGCGGGCAGCTCTGCTGCACAAGACCATACAGCTGGCGGCCGAGCTGCGGGGGACGATGGGCAACATGTT
CAGCTTCGCCGCTGTCATGGGCGCCCTGGAGATGGCCCAGATTTCAAGGCTGGAGCAGACATGGATGACC
CTGCGACAGCGACACACGGAGGGTGCCATTCTGTACGAGAAGAAGCTCAAGCCTTTCCTCAAGAGCCTGA
ACGAGGGCAAAGAAGGCCCACCGCTGAGCAACACCACGTTTCCACACGTACTTCCTTTCATTACTCTGCT
GGAATGTGACTCTGCCCCCGCCGAGGGTCCTGAACCTTGGGGCAGCACAGAACACGGTGTGGAGGTTGTG
CTAGCCCACCTGGAGGCCGCCCGCACTGTGGCCCACCACGGGGGCCTCTACCACACCAACGCTGAGGTCA
AGCTGCAAGGGTTCCAAGCCCGACCGGAGCTCCTGGAAGTATTCAGCACAGAGTTCCAGATGCGGCTCCT
CTGGGGCAGCCAGGGTGCCAACAGCAGCCAGGCCTGGCGCTATGAGAAGTTTGACAAAGTCCTCACTGCC
TTGTCCCACAAGCTGGAACCTGCCATCCGCTCTAGCGAGCTGTGA

Translation (854 aa):
MTEMPKKTGRKFKFFKFKGLGSLSNLPRSFSLRRSSASASIRSCPEPDTFEATQDDMVTLPKSPPAYARS
SDMYSHMGTMPRPNIKKAQKQQAVQKAQEVSRESHLVSRRLPEPPDLEAAKEAGEGTEALLEDTAPSAVE
VDPMRELEDLTVDTEKEQVPGDVSPERTAAELEAAGDYVKFSKEKYILDSSPEKLHKELEEELKLSSTDL
RSHAWYHGRIPREVSETLVQRNGDFLIRDSLTSLGDYVLTCRWHNQALHFKINKVVVKAGESYTHIRYLF
EQESFDHVPALVRYHVGSRKAVSEQSGAIIYCPVNRTFPLRYLEASYGLSQGSSKTASPASPSGSKGSHM
KRRSITMTDGLTTDKVTRSDGCPNSTSLPHPRDSIRNCALSMDQIPDLHSPLSPISESPSSPAYSTVTRV
HAPSATPSTSAQPASPVARRSSEPQLCPGNTPKPPGESDRAPHASPSHTLCKASPSPSLSSYSDPDSGHY
CQLQPPVRGSREQAAGETPRKARGSGERQKELLENGVSDGEWGKTFTVPVVEATSSFNLATFQSQLIPKE
NRPLEVALLRKVKELLSEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDL
LERFHTMSIMLAVDILGCTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALEMAQISRLEQTWMT
LRQRHTEGAILYEKKLKPFLKSLNEGKEGPPLSNTTFPHVLPFITLLECDSAPAEGPEPWGSTEHGVEVV
LAHLEAARTVAHHGGLYHTNAEVKLQGFQARPELLEVFSTEFQMRLLWGSQGANSSQAWRYEKFDKVLTA
LSHKLEPAIRSSEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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