NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15862.1 Public Mus musculus 2 Gle1 23 108 98 CCDS HistoryNCBI Gene:74412Re-query CCDS DB by CCDS ID:15862.1Re-query CCDS DB by GeneID:74412See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15862.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019859.8 ENSMUSP00000019859.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019859.8Link to Ensembl Protein Viewer:ENSMUSP00000019859.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000019859Re-query CCDS DB by Protein ID:ENSMUSP00000019859
Original member Current member NCBI NM_028923.3 NP_083199.1 Accepted alive Link to Nucleotide Sequence:NM_028923.3Link to Protein Sequence:NP_083199.1Re-query CCDS DB by Nucleotide ID:NM_028923Re-query CCDS DB by Protein ID:NP_083199Link to BLAST:NP_083199.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083199.1 699 Q8R322 699 100% 0 0

Chromosomal Locations for CCDS 15862.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29935500 29935598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29936010 29936237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29938495 29938605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29939135 29939283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29939483 29939543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29940082 29940336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29942538 29942766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29943725 29943837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29943989 29944058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29948890 29949032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29949156 29949346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29950602 29950731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29952555 29952659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29955606 29955688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29957750 29957813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29958447 29958515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2100 nt):
ATGCCGTCCGATGGTCGCTGCTGGGAAACTCTGAGGGCGCTCCGCAACACCAGCAAAGGCCGCCTGCGCT
ACGACCGCGAGTGGCTGCTGCGCTACGAGGATGTTTTGGAAGAATGCATGTCTCTTCCCAAACTGTCTTC
TTACTCTGGATGGGTGGTAGATCACATCCTACCCAACACCTCAGGCCACACGCAAGAGAGTGCTCCTTCT
TCTGATAATTCACCATCCTCTGGATCTGCATCTGGCTTGTACCAATCCTCACTACTAAAATCTCCTGTCA
GAAGTAGCCCACAATCCCCGTCACCCTCATCACCAAATGGAACCCAGAGCACACATGAGTCCCCGTTCAC
AGAACCTATTGCACCTCAGTCCTCCCGGGCGATCAAAGTGGAAGGTTGCATCCGAATGTACGAATTGGCG
CACAGAATGAGAGGAACAGAGGGCCTGAGGCAATGGCAGGAGGAGCAAGAGAGGAAGGTGCGAGCCCTCT
CAGAGATGGCATCGGAGCAGCTAAAGAGGTTTGACGAGCTGAAGGAGCTGAAGCTGCATAAGGAGTTCCA
GGACTTACAGGAAGTGATGGAGAAGAGTACCAGGGAGGCCCTGGGCCATCAGGAGAAGCTGAAAGAGGAG
CACCGCCACAGAGCCAAGATTCTCAACCTAAAGCTTCGAGAGGCAGAGCAGCAGCGTGTGAAGCAGGCAG
AGCAGGAGCAGCTTCGGAAGGAGGAAGGTCAGGTCCGTCTGCGCAGCCTGTACTCCCTGCAAGAGGAGGT
CCTGCAGCTCAACCAGCAGTTGGATGCCTCCAGTCAGCACAAAGAGCTGCTGAGTGTGGACCTGGCTGCC
TTCCAGACCCGGGGCAACCAGCTGTGTGGCCTCATCTCCAGCATCATCCGCACCACCTTGGAGAGTGGTT
ATCCCACAGCAGAGAACCAAGCTGAGGCAGAGCGAGCCCTGCAGGAAATGCGGGACCTCCTCTCAGATTT
GGAGCAGGAGATCACCAGAGCCTCTCAAGTGAAGAAGAAGCACGAAGAGGAGGCCAAGGTCAAGCGGCAG
GAGTCACAGGTGCAGCAGGGGCCAGCGCCTCCCACCCAGACCTCTGCACCCAGCCCAAGCCCAGTAGGAG
CACAGAATGAAGACCTGCAGGTGAAGGTGCAAGATAGTACGATGCAGTGGTACCAGCAACTTCAGGATGC
TTCTGCCAAGTGTGTGTTGGCCTTCGAGGACCTGACCAGCAGCAAGGATAGTCAGACCAAGAAGATAAAG
ATGGACTTGCAGAAGGCAGCCACCATCCCAGTGAGCCAGATCTCCACCATTGCAGGTTCAAAGCTGAAGG
AGATCTTTGACAAGATCCATAGCCTTCTCTCTGGAAAGCCTGTTCAGTCTGGTGGGCGTTCCGTGTCTGT
CACTCTTAACCCTCAGGGGCTGGACTTTGTCCAGTACAAACTGGCAGAGAAATTTGTGAAACAAGGGGAG
GAGGAAGTGGCCTCTCACCACGAAGCGGCATTCCCCATTGCAGTGGTGGCATCTGGTATCTGGATGCTCC
ACCCTAAAGTGGGAGACCTCATTCTTGCTCATCTCCACAAGAAGTGTCCATACTCTGTTCCTTTCTACCC
AGCTTTCAAGGAAGGGATGGCCTTGGAGGACTATCAAAGGATGCTTGGCTACCAAGTGACGGATTCCAAG
GTTGAGCAACAGGACAACTTTCTAAAACGCATGTCTGGGATGATCCGTCTGTATGCCGCCATCATCCAGC
TCCAGTGGCCGTATGGGAACCGGCAGGAGGCTCATCCTCATGGCTTAAATCATGGCTGGCGCTGGTTGGC
CCAGGTCTTAAACATGGAGCCTCTCTCAGATGTGACAGCTACCCTCCTGTTTGACTTCTTGGAGGTGTGC
GGGAACGCCCTTATGAAGCAGTACCAGGTCCAGTTCTGGAAGATGATACTTCTCATCAAAGAGGACTACT
TCCCCAGAATTGAAGCCATCACGAGCTCAGGACAGATGGGCTCTTTCATACGTCTGAAGCAGTTCTTGGA
GAAATGTCTGCAACGAAGGGAGATTCCTGTGCCCAGAGGCTTTCTGACAACCTCCTTCTGGCGCTCCTGA

Translation (699 aa):
MPSDGRCWETLRALRNTSKGRLRYDREWLLRYEDVLEECMSLPKLSSYSGWVVDHILPNTSGHTQESAPS
SDNSPSSGSASGLYQSSLLKSPVRSSPQSPSPSSPNGTQSTHESPFTEPIAPQSSRAIKVEGCIRMYELA
HRMRGTEGLRQWQEEQERKVRALSEMASEQLKRFDELKELKLHKEFQDLQEVMEKSTREALGHQEKLKEE
HRHRAKILNLKLREAEQQRVKQAEQEQLRKEEGQVRLRSLYSLQEEVLQLNQQLDASSQHKELLSVDLAA
FQTRGNQLCGLISSIIRTTLESGYPTAENQAEAERALQEMRDLLSDLEQEITRASQVKKKHEEEAKVKRQ
ESQVQQGPAPPTQTSAPSPSPVGAQNEDLQVKVQDSTMQWYQQLQDASAKCVLAFEDLTSSKDSQTKKIK
MDLQKAATIPVSQISTIAGSKLKEIFDKIHSLLSGKPVQSGGRSVSVTLNPQGLDFVQYKLAEKFVKQGE
EEVASHHEAAFPIAVVASGIWMLHPKVGDLILAHLHKKCPYSVPFYPAFKEGMALEDYQRMLGYQVTDSK
VEQQDNFLKRMSGMIRLYAAIIQLQWPYGNRQEAHPHGLNHGWRWLAQVLNMEPLSDVTATLLFDFLEVC
GNALMKQYQVQFWKMILLIKEDYFPRIEAITSSGQMGSFIRLKQFLEKCLQRREIPVPRGFLTTSFWRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH