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Report for CCDS15759.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15759.2 Public Mus musculus 2 Tprn 23 108 98 CCDS HistoryNCBI Gene:97031Re-query CCDS DB by CCDS ID:15759.2Re-query CCDS DB by GeneID:97031See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 15759.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15759.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114336.3 ENSMUSP00000109975.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114336.3Link to Ensembl Protein Viewer:ENSMUSP00000109975.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114336Re-query CCDS DB by Protein ID:ENSMUSP00000109975
Original member Current member NCBI NM_175286.4 NP_780495.2 Accepted alive Link to Nucleotide Sequence:NM_175286.4Link to Protein Sequence:NP_780495.2Re-query CCDS DB by Nucleotide ID:NM_175286Re-query CCDS DB by Protein ID:NP_780495Link to BLAST:NP_780495.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780495.2 749 A2AI08 749 100% 0 0

Chromosomal Locations for CCDS 15759.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25262688 25264553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25268832 25269045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25269133 25269239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25269356 25269418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGGCCGGCCTGGGGCGGCTCGACCCGGGGCCGCGAACCGTGATGCCCGCCTGGAAACGGGAGATCCTTG
AGCGGAGGCGAGCTAAACTGGCCGCCCTGAGCGGAGGCCAGGGATCTGGAGCGGCGCCGGATGGGCCTAA
CGAGCGGCTGGTGCTGGCCGAGAGTCTGGGTCCACTAAGCCAGAACCCGTTCATGCGACTTGAGTCGGAG
CGGCGGCGCGGGACGCGGCCCGCTCAGCAGCTGCTGGAGCTGTACTGTCGCGTGCCCGGCGTGCGGACCA
TTCGAGCGGACAACATCCTCATCATCGAGTCAGCGCCAGGCTTCCCACCCGCTGTGCCGCCCGCTGCGGG
CATCCGCGCTGCCGAGGTAGTAGTGTACGAGGCGCCACAGCCCGGCCGTGTCAGCCGCCTGCTGGAAAAG
TTCGACTCGCCTGCTGCGCCCTGCCGCCGCGGGAGCCCAGAGCGCTTCCGCCCTGCGCTCCCGCAGCTTC
CCGTGGCGTCTGCATCTGCTGCCACGCGCACTCCTACCAATCGGTCGTTGGCTCCTGCCTCACCGGTGCG
CCTCAGCCAGCCCGCACCCCCTATTTCGCCTGTCCCCGTTGCCCAGCGCGCGGGTCAGCGCTCTGCCTGT
TGCGAGCCCGCGCACCCCGACGGCACTGCCGGCCCCGGGGCCCGGCGCAGCGACTTTTTACAGAAGACCG
GCAGCAACTCTTTCACTGTTCACCCCCGGGGCCTGCCCCGCAGTGCGGTCAATCGCTCGCTTTCTAATGG
ACCCATGACTCAGGAATCCCCTACCGGCCCTGCCAATGGGTTGTCAGGCTCTCCGCCTGTACCGGGAAAG
TGGAAGCCAAAGGTGGAGTCAAAGGAACCCTCTCTCCACCCGCCCCCAAGCCCTGGGACTCCAAGTGCCA
CTTCAGTTGGGCCCCCTGCCTTCCCAGCGCCCAGCCCAGCCAGTGCCACTCCCAGTCAGCGCCAGTGGGT
CTCCTCTGCCACCAGCGCCAATGATTCCTTTGAAATAAGGCCATCCTCCAAGCCAGACATGGAAACTATC
CCAATCGGGGACCTTCAGGCCAGGGCCCTGGCCAACCTCCGAGTGAACTCCCGCAACTCCTTCGTGTTGA
TCCCCAAGCGCAAAGCCCCTGGGAACTATCCTTTGGCGGGGAGGCAATTTGAGGAGCCAAAGGGGGAGGT
GGGCTGGGCCTCTCAGAGCCAGGGGCTCGGATCCCAGCTGGTGTCTACAGTGGATGGTGCACCTGCCCTA
GAGAAGAGTCCCTTGGCTGCTGAGATGCAGTGGGCAGTTAGGAAGGGGGCCTGCCCCAGGCCAGCAATTT
CTGACACAGACAAGTGTGTTAGGTGGCAGAGACCAGCCTCGCCACCTCCATTTCTACCAGCCACAGCTGA
AGCTGAGCCGGCTGAAGGCTTGGGGGTTCCTGGCTTGGCCAAGAATGGCCAGGAGCCTGTGAGGCCAGGA
CTTCCAGTCACCTTCATTGATGAAGTAGACTCAGAGGAGGAGGCCTTTCAAGAAGCCAAACTGCCCTCCT
CAGCAGTTGGTGTGCCTTCCCAGTACCACCTGCACCCTGCCAGGCCTGGACACACCTCAGAACTCCTGAA
CCGAGGTAGCAACACTTTCACAGTAGTGCCCAAGAGAAAGCCAGGGACCCTTCAGGAGCCACACTTAAGT
CAGACCAATGGTCAGTCCCAGCAAGGGGCAGAGGAACAGGATGCTGAGAGCCTCTCAGGACCCCATACTA
CCCTGGAGAACACCCTAAAGAAACGATACCCCACTGTGCACGAGATTGAGGTGATTGGTGGTTACCTGGC
CCTGCAGAAGTCCTGCCTCATCAAAGCTGGCTCCTCGAGAAAAAAGATGAAGATCTCCTTCAATGACAAG
AGCCTGCATACAACATTTGAGTACCCTTCTGAGAGCTCTCTGGCACAGGAAGAGGCGGAGGAGGAGGAGG
AGGAGGAAGGAGAGGAAGATGGTGAAGAGGAGGAAGTGGGGCCTGACTCAGAGAAACCCTTCACAGTTTT
CTTGCCCCGGGCCACATTTGTAAGCAGTGTGGGACCTGAGAGCAGCTCAGGTCTGTCCAGCTACACTCCA
AAGCATTCCATGGCCTTCAGCAAGTGGCAGGAACAGACACTGGTGCAGACTCCAACTGATGTGGAGCTCC
CACCGAAGGAGGTCATGCTCACACCTGCCAGTCAGAACGACCTCTCGGACTTCCGCAGCGAGCCAGCCCT
CTATTTCTGA

Translation (749 aa):
MAGLGRLDPGPRTVMPAWKREILERRRAKLAALSGGQGSGAAPDGPNERLVLAESLGPLSQNPFMRLESE
RRRGTRPAQQLLELYCRVPGVRTIRADNILIIESAPGFPPAVPPAAGIRAAEVVVYEAPQPGRVSRLLEK
FDSPAAPCRRGSPERFRPALPQLPVASASAATRTPTNRSLAPASPVRLSQPAPPISPVPVAQRAGQRSAC
CEPAHPDGTAGPGARRSDFLQKTGSNSFTVHPRGLPRSAVNRSLSNGPMTQESPTGPANGLSGSPPVPGK
WKPKVESKEPSLHPPPSPGTPSATSVGPPAFPAPSPASATPSQRQWVSSATSANDSFEIRPSSKPDMETI
PIGDLQARALANLRVNSRNSFVLIPKRKAPGNYPLAGRQFEEPKGEVGWASQSQGLGSQLVSTVDGAPAL
EKSPLAAEMQWAVRKGACPRPAISDTDKCVRWQRPASPPPFLPATAEAEPAEGLGVPGLAKNGQEPVRPG
LPVTFIDEVDSEEEAFQEAKLPSSAVGVPSQYHLHPARPGHTSELLNRGSNTFTVVPKRKPGTLQEPHLS
QTNGQSQQGAEEQDAESLSGPHTTLENTLKKRYPTVHEIEVIGGYLALQKSCLIKAGSSRKKMKISFNDK
SLHTTFEYPSESSLAQEEAEEEEEEEGEEDGEEEEVGPDSEKPFTVFLPRATFVSSVGPESSSGLSSYTP
KHSMAFSKWQEQTLVQTPTDVELPPKEVMLTPASQNDLSDFRSEPALYF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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