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Report for CCDS15753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15753.1 Public Mus musculus 2 Tubb4b 23 108 98 CCDS HistoryNCBI Gene:227613Re-query CCDS DB by CCDS ID:15753.1Re-query CCDS DB by GeneID:227613See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15753.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043584.4 ENSMUSP00000042342.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043584.4Link to Ensembl Protein Viewer:ENSMUSP00000042342.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043584Re-query CCDS DB by Protein ID:ENSMUSP00000042342
Original member Current member NCBI NM_146116.2 NP_666228.1 Accepted alive Link to Nucleotide Sequence:NM_146116.2Link to Protein Sequence:NP_666228.1Re-query CCDS DB by Nucleotide ID:NM_146116Re-query CCDS DB by Protein ID:NP_666228Link to BLAST:NP_666228.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666228.1 445 P68372 445 100% 0 0

Chromosomal Locations for CCDS 15753.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25222308 25223368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25223934 25224044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25224124 25224232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25224534 25224590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGAGGGAGATCGTGCACCTGCAGGCTGGGCAGTGCGGCAACCAGATTGGCGCCAAGTTCTGGGAGGTAA
TC
AGCGACGAGCATGGCATTGATCCCACTGGCACTTACCACGGAGATAGCGACCTCCAGCTGGAGCGCAT
C
AACGTGTACTACAACGAAGCCACCGGTGGCAAGTATGTGCCCCGCGCCGTGCTCGTGGACTTGGAGCCC
GGC
ACCATGGACTCGGTGCGTTCAGGGCCCTTCGGGCAGATCTTCAGACCTGATAACTTCGTCTTTGGTC
AG
AGTGGGGCTGGGAACAACTGGGCCAAGGGGCACTACACAGAAGGTGCAGAGCTGGTTGACTCGGTGTT
G
GACGTTGTGAGAAAGGAAGCTGAGAGCTGTGACTGCCTGCAGGGCTTCCAGCTGACCCACTCCCTGGGT
GGG
GGGACTGGGTCTGGGATGGGTACCCTCCTTATCAGCAAGATCCGGGAGGAGTACCCAGACAGAATCA
TG
AACACCTTCAGTGTGGTACCTTCCCCCAAGGTGTCGGACACAGTGGTTGAGCCCTACAATGCCACCCT
T
TCAGTCCACCAGCTGGTTGAAAACACAGATGAGACCTATTGTATTGATAATGAAGCACTTTATGACATC
TGC
TTCAGAACCCTAAAGCTGACCACACCCACTTACGGTGACCTGAACCATCTAGTGTCCGCCACCATGA
GT
GGGGTAACCACTTGCCTGCGATTCCCTGGCCAGCTAAATGCTGACCTGCGGAAACTGGCTGTAAATAT
G
GTGCCCTTCCCTCGCCTGCACTTCTTCATGCCTGGCTTTGCCCCCTTGACCAGCCGGGGCAGCCAGCAG
TAC
CGTGCCCTGACAGTTCCTGAGCTCACCCAGCAGATGTTTGATGCCAAGAACATGATGGCTGCCTGTG
AT
CCAAGACATGGGCGCTACTTGACTGTGGCTGCCGTGTTCAGGGGCCGCATGTCTATGAAGGAGGTGGA
C
GAACAGATGCTTAATGTCCAAAACAAGAACAGCAGCTACTTTGTTGAGTGGATCCCCAACAATGTGAAG
ACA
GCTGTCTGTGACATTCCACCTCGGGGCCTGAAAATGTCGGCCACCTTCATTGGCAACAGCACCGCTA
TT
CAGGAGCTGTTCAAACGCATCTCAGAGCAGTTCACAGCCATGTTCCGACGCAAGGCCTTCCTACACTG
G
TACACGGGTGAAGGCATGGATGAGATGGAGTTCACTGAGGCTGAGAGCAACATGAACGACCTGGTGTCC
GAG
TACCAGCAGTACCAGGACGCTACAGCTGAGGAAGAGGGAGAGTTTGAGGAGGAGGCTGAGGAGGAGG
TG
GCTTAG


Translation (445 aa):
MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEP
G
TMDSVRSGPFGQIFRPDNFVF
GQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLG
G
GTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
C
FRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQ
Y
RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVK
T
AVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
E
YQQYQDATAEEEGEFEEEAEEEVA




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 Genome Browser Links:   Ensembl Genome Browser
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