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Report for CCDS15622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15622.1 Public Mus musculus 1 Lpgat1 23 108 98 CCDS HistoryNCBI Gene:226856Re-query CCDS DB by CCDS ID:15622.1Re-query CCDS DB by GeneID:226856See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110855.7 ENSMUSP00000106479.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110855.7Link to Ensembl Protein Viewer:ENSMUSP00000106479.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110855Re-query CCDS DB by Protein ID:ENSMUSP00000106479
Original member NCBI NM_172266.3 NP_758470.1 Updated not alive Link to Nucleotide Sequence:NM_172266.3Link to Protein Sequence:NP_758470.1Re-query CCDS DB by Nucleotide ID:NM_172266Re-query CCDS DB by Protein ID:NP_758470
Current member NCBI NM_172266.4 NP_758470.1 Accepted alive Link to Nucleotide Sequence:NM_172266.4Link to Protein Sequence:NP_758470.1Re-query CCDS DB by Nucleotide ID:NM_172266Re-query CCDS DB by Protein ID:NP_758470Link to BLAST:NP_758470.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758470.1 370 Q91YX5 370 100% 0 0

Chromosomal Locations for CCDS 15622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 191719381 191719618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191749540 191749658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191755932 191756027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191759974 191760247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191763545 191763671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191776323 191776429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191778383 191778534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGCCGTGACCGTGGAAGAAGCTCCGTGGCTGGGCTGGATTGTAGCGAAAGCCCTGATGAGATTTGCCT
TCATGGTCGCCAACAACCTGGTCGCTATTCCATCCTACATCTGCTATGTAATTATACTGCAGCCACTCCG
AGTGCTGGACAGTAAGCGCTTCTGGTATATCGAAGGACTCATGTACAAATGGCTTTTAGGAATGGTGGCT
TCCTGGGGCTGGTATGCTGGATACACAGTGATGGAATGGGGGGAAGATATTAAAGCAATCGCTAAAGATG
AAGCAGTGATGTTGGTGAACCACCAGGCAACTGGAGATGTGTGTACATTGATGATGTGCCTACAGGATAA
AGGACCGGTTGTCGCTCAGATGATGTGGCTGATGGATCATATTTTCAAGTATACAAACTTTGGAATTGTT
TCTCTTATTCATGGAGACTTCTTTATAAGACAGGGAAGAGCCTACCGCGACCAACAGCTGCTGGTTCTCA
AGAAGCACCTTGAACATAATTACAGGAGCAGAGATCGAAAATGGATCGTTTTGTTTCCGGAAGGGGGCTT
CCTCAGGAAGAGGCGAGAAACAAGCCAGGCATTTGCCAAGAAAAATAACTTGCCATTTCTTACACATGTC
ACTTTGCCAAGGTTTGGGGCAACAAACATTATTTTGAAGGCACTTGTAGCACGGCAGGAAAATGGAAGCC
CAGCAGGAGGAGACGCTAGAGGCTTAGAATGCAAATCAAGAGGCCTCCAGTGGATAATAGATACAACCAT
AGCTTATCCCAAAGCTGAACCAATAGACATTCAGACCTGGATCCTGGGGTACAGGAAACCAACAGTCACT
CATGTCCATTACAGGATTTTCCCAATTGGAGATGTGCCCTTGGAGACCGAGGACCTCACCAGCTGGCTCT
ATCAGCGCTTTATTGAGAAGGAGGACCTCCTGTCCCATTTTTATAAGACAGGAGCCTTTCCTCCTCCCCA
GGGCCAGAAGGAAGCTGTGTGCAGAGAGATGACCCTCAGCAACATGTGGATATTCCTCATCCAGTCCTTT
GCGTTTTTGTCAGGCTATCTGTGGTACCACATCATTCAGTATTTTTACCATTGTCTATTTTAG

Translation (370 aa):
MAVTVEEAPWLGWIVAKALMRFAFMVANNLVAIPSYICYVIILQPLRVLDSKRFWYIEGLMYKWLLGMVA
SWGWYAGYTVMEWGEDIKAIAKDEAVMLVNHQATGDVCTLMMCLQDKGPVVAQMMWLMDHIFKYTNFGIV
SLIHGDFFIRQGRAYRDQQLLVLKKHLEHNYRSRDRKWIVLFPEGGFLRKRRETSQAFAKKNNLPFLTHV
TLPRFGATNIILKALVARQENGSPAGGDARGLECKSRGLQWIIDTTIAYPKAEPIDIQTWILGYRKPTVT
HVHYRIFPIGDVPLETEDLTSWLYQRFIEKEDLLSHFYKTGAFPPPQGQKEAVCREMTLSNMWIFLIQSF
AFLSGYLWYHIIQYFYHCLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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