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Report for CCDS15535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15535.1 Public Mus musculus 1 Or10aa1 23 108 98 CCDS HistoryNCBI Gene:258712Re-query CCDS DB by CCDS ID:15535.1Re-query CCDS DB by GeneID:258712See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052975.5 ENSMUSP00000056772.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052975.5Link to Ensembl Protein Viewer:ENSMUSP00000056772.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000052975Re-query CCDS DB by Protein ID:ENSMUSP00000056772
Original member Current member EBI ENSMUST00000214690.1 ENSMUSP00000149005.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214690.1Link to Ensembl Protein Viewer:ENSMUSP00000149005.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214690Re-query CCDS DB by Protein ID:ENSMUSP00000149005
Original member Current member NCBI NM_146717.2 NP_666928.2 Accepted alive Link to Nucleotide Sequence:NM_146717.2Link to Protein Sequence:NP_666928.2Re-query CCDS DB by Nucleotide ID:NM_146717Re-query CCDS DB by Protein ID:NP_666928Link to BLAST:NP_666928.2

Chromosomal Locations for CCDS 15535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 174041952 174042896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGATCATGTCAACTACACCTGGACACGGACCTTCATCCTTGCTGGTTTCACTACCTCTGGTGCCCTCC
GACCTCTTGCCTTCCTGGGGACCCTGTGCATCTATCTCCTCACACTGGCAGGGAACTTGTTCATCATTGT
CTTGGTTCAGGCAGATTCAGGGCTGTCCACTCCCATGTACTTCTTTATCAGTGTCCTCTCCTTCCTGGAA
CTCTGGTATGTCAGCACCACAGTGCCCACCTTGCTGCACACCCTGCTCCATGGGCATTCACCCATCCCCT
CGTCTGCATGCTTCGTCCAGCTGTATGTCTTTCACTCCTTGGGCATGACCGAGTGCTACCTGTTAGGTGT
CATGGCTCTGGACCGCTACCTTGCTATCTGTCGTCCACTGCACTACCATGCACTCATGAGCAGGCAGGTA
CAGCTATGGCTTGCAGGTGCCACTTGGGTAGCTGGCTTTTCAGCTGCCCTGGTGCCTGCATGTCTCACTG
CCAGTTTACCGTATTGCTTGAAAGAAATAGCCCATTACTTTTGTGACCTGGCACCACTAATGCGGTTGGC
ATGTGTGAGCACAAGGTGGCATGCTCGGGTTCACGGGGCAGTGATTGGTGTGGCCACTGGATGCAATTTT
GTCCTCATCTTGGGACTCTATGGGGGTATTCTGACAGCTGTCCTGAAGCTGCCTTCAGCTGCCAGTCGAG
CCAAAGCCTTCTCCACATGCTCCTCCCATATGACAGTGGTTGCACTGTTCTATGCTTCTGCTTTTACTGT
GTATGTGGGTTCACCTCAGAGCAGACCTGAGGGCACTGACAAACTTATTGCCTTAGTGTATGCCCTCCTA
ACTCCATTCCTCAACCCTATCATCTATTCCCTTCGCAACAAAGAGGTGAAGGAAGCCGTGAAGAGGGTCA
GTGAAAAGATCAGAACTTTGTTGAGAGACACCTAA

Translation (314 aa):
MDHVNYTWTRTFILAGFTTSGALRPLAFLGTLCIYLLTLAGNLFIIVLVQADSGLSTPMYFFISVLSFLE
LWYVSTTVPTLLHTLLHGHSPIPSSACFVQLYVFHSLGMTECYLLGVMALDRYLAICRPLHYHALMSRQV
QLWLAGATWVAGFSAALVPACLTASLPYCLKEIAHYFCDLAPLMRLACVSTRWHARVHGAVIGVATGCNF
VLILGLYGGILTAVLKLPSAASRAKAFSTCSSHMTVVALFYASAFTVYVGSPQSRPEGTDKLIALVYALL
TPFLNPIIYSLRNKEVKEAVKRVSEKIRTLLRDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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