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Report for CCDS15034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15034.1 Public Mus musculus 1 Marchf4 23 108 98 CCDS HistoryNCBI Gene:381270Re-query CCDS DB by CCDS ID:15034.1Re-query CCDS DB by GeneID:381270See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047786.5 ENSMUSP00000042803.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047786.5Link to Ensembl Protein Viewer:ENSMUSP00000042803.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047786Re-query CCDS DB by Protein ID:ENSMUSP00000042803
Original member Current member NCBI NM_001045533.2 NP_001038998.1 Accepted alive Link to Nucleotide Sequence:NM_001045533.2Link to Protein Sequence:NP_001038998.1Re-query CCDS DB by Nucleotide ID:NM_001045533Re-query CCDS DB by Protein ID:NP_001038998Link to BLAST:NP_001038998.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038998.1 409 Q80TE3 409 100% 0 0

Chromosomal Locations for CCDS 15034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 72428642 72429009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72447156 72447348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72452442 72452597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72534625 72535137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGCTCATGCCCCTGGGTGGGCTGCTGTGGTGGTGGTGCTGCTGCTGCGGCTGGTACAGCTGTGGACTGT
GCACCCCAGCTCCCCAGATGTTGCGCCACCAGGGTCTCCTCAAGTGCCGCTGTCGAATGCTCTTCAATGA
CCTGAAGGTTTTCCTACTGAGGCGCCCCCCTCCAGCGCCCCTGCCCATGCACGGCGACCCTCAGCTCCCT
GGTGTGGCGGCCAACAACAACACCCTTCCGGCTCTGGGTGCCGGGGGGTGGGCAGGCTGGAGGGGCCCCC
GAGAAGCGGTGGGCAGGGAGACCCCTCCTCTGCCACCTCCACCACCTTTGCCTCCTTCTGGGGATGATGA
CTGGGATGGCCCAGCCACAGGGCCACCTGCCTCCCTGCTCAGCAGTGCTTCCTCTGATGAATTCTGTAAG
GAGAAAACTGAGGACTGCTACTCTCTGGGAAGTAGCTTGGACAGTGGTATGAGAACTCCCCTCTGCCGCA
TCTGTTTCCAGGGACCAGAACAGGGAGAGCTGCTAAGCCCATGCCGTTGTGATGGTTCAGTCAAATGTAC
ACACCAGCCATGTCTCATCAAATGGATCAGTGAAAGGGGCTGCTGGAGTTGTGAGCTGTGCTACTACAAG
TACCATGTCATCGCCATAAGCACAAAGAATCCTCTACAGTGGCAGGCCATATCCCTGACGGTCATCGAGA
AGGTTCAAATTGCAGCCGCCATCTTGGGTTCTCTCTTCCTCATCGCCAGTATCTCTTGGCTCATCTGGTC
GACCTTCAGTCCCTCAGCAAAATGGCAACGTCAAGACCTCCTCTTCCAGATCTGCTATGGGATGTATGGC
TTCATGGACGTGGTGTGCATAGGCCTCATCATCCACGAAGGGCCCTCGGTATATCGCATCTTTAAACGCT
GGCAGGCTGTAAACCAGCAGTGGAAAGTGCTGAACTATGACAAGACAAAAGACTTAGAGGATCAAAAATC
AGGAGGCAGGACAAACCTACAGACTTCCTCATCTGCCCAAGCCAACCTACCCTCTGCGGAAGAGGAGGCA
GCCAGCCCGCCTGCCCGTGAAGAGGGCCCCACCAGGGCCGCCAGCCACCCCTCAGGCCCTGTGTCCCAAC
ACCACTGTGCTTACACCATCCTACACATCCTGAGTCACTTGAGACCTCATGACCAGCGGAGCACCCAGGG
CAGCGGCCGAGAGCTTGTCATGAGAGTCACCACAGTGTGA

Translation (409 aa):
MLMPLGGLLWWWCCCCGWYSCGLCTPAPQMLRHQGLLKCRCRMLFNDLKVFLLRRPPPAPLPMHGDPQLP
GVAANNNTLPALGAGGWAGWRGPREAVGRETPPLPPPPPLPPSGDDDWDGPATGPPASLLSSASSDEFCK
EKTEDCYSLGSSLDSGMRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYK
YHVIAISTKNPLQWQAISLTVIEKVQIAAAILGSLFLIASISWLIWSTFSPSAKWQRQDLLFQICYGMYG
FMDVVCIGLIIHEGPSVYRIFKRWQAVNQQWKVLNYDKTKDLEDQKSGGRTNLQTSSSAQANLPSAEEEA
ASPPAREEGPTRAASHPSGPVSQHHCAYTILHILSHLRPHDQRSTQGSGRELVMRVTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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