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Report for CCDS49653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49653.1 Public Mus musculus 15 Fbxl6 23 108 98 CCDS HistoryNCBI Gene:30840Re-query CCDS DB by CCDS ID:49653.1Re-query CCDS DB by GeneID:30840See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023219.8 ENSMUSP00000023219.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023219.8Link to Ensembl Protein Viewer:ENSMUSP00000023219.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023219Re-query CCDS DB by Protein ID:ENSMUSP00000023219
Original member Current member NCBI NM_013909.2 NP_038937.2 Accepted alive Link to Nucleotide Sequence:NM_013909.2Link to Protein Sequence:NP_038937.2Re-query CCDS DB by Nucleotide ID:NM_013909Re-query CCDS DB by Protein ID:NP_038937Link to BLAST:NP_038937.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038937.2 535 Q9QXW0-1 535 100% 0 0

Chromosomal Locations for CCDS 49653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76535804 76535963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76536225 76536471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76536573 76536804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76536893 76537006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76537090 76537197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76537289 76537420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76537723 76537786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76537917 76538075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76538325 76538716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGCTCCCGTGGCCTCTAGGCGAGTTAGACGTCGAGTTCGAAGCTCCAAGCGGCCCGATGCGCGGGGCC
GCTCGGCGGAGGACTGGTGGTGGGACCGCCTGGCACCTCGCGGCTCTGGGTACCACCTGCTGCAAGCGGA
CAGCATGTTGCTCGTGCTGCCGGACCTGGAGCCTCCCCGCGCTCGTGCGCACCGGCGCGCCCGTCGCCGC
GCTCCGAGGTCACTGGCTCGTGGCCCCACGGCTGTCGCCAAGCCCAGGACCAAACCCCGACCGGAGCCGT
CGCTCGATCAGGGCCTGGACTCTGGTTGGGGAGACCGTATTCCCTTAGAAGTCCTGGTGCATATTTTCGG
GTTGTTGGTTGCGGCTCATGGGCCCATGCCGTTTCTTGGCAGGGCTGCACGCGTTTGCCGTCACTGGCAC
GAAGCCACCTCCCATCCTTCACTCTGGCATACTGTGACCCTGTCACCCTCGCTGGTTGGCCGGGCTGGCA
AGGGCAACCTTAAGGGAGAGAAGAAGCTCCTTGCTTGCCTGGAGTGGCTCGTACCCAATCGGTTCTCTCA
GCTCCAGAGCTTGACCCTCATCCACTGGAAGTCTCAAGTACACTCTGTGTTGGAGCTGGTTAGCAAGTTC
TGCCCTCGGCTCACCTTCCTCAAGCTTTCAGACTGCCACACTGTGACTGCTGAAACTCTGGTCATGTTAG
CGAGAGCCTGCTGCCAGCTCCACAGCCTGGACCTACATCATTCCATGGTGGAGTCCACAGCTGTGGTGAG
CTTCTTGGAGGAGGCCGGGTCCCGAATGCGTAAACTGTGGCTGACCTACAGTTCCCAGACGACGGCCATC
TTGGGCGCACTGCTGGACAACTGCTGCCCACAGCTCCAAGTCCTCCAGGTCAGCACTGGCATGAACTGCA
ACAACACACCCCTGCAGCTGCCTGTGGAAGCCCTGCAGAAAGGCTGCCCCCAGCTGCAGGTGCTGCGGCT
GCTGAATCTGATTTGGCTTCCCAAGCCGTGTGGCCGAGGCGTGCCCCAGGGACCAGGCTTCCCCAGTCTT
GAGGAGCTCTGTTTGGCTGGCTCCACCTGCAACTTTGTGAGCAATGAGGTTCTGGGCCGATTGCTCCATC
GCTCCCCGAAACTGCGCATGCTGGACCTTCGAGGCTGCGCTAGGGTCACTCCTAGCGGTCTGTGTCATCT
GCCATGTCAAGAGCTGGAGCAACTCTACCTGGGCCTGTATGGCATATCTGATGGCTTGACCCTGGCTAAG
GATGGCAGCCCCCTGTTGACCCGGAAGTGGTATCACACCCTGAGGGAGCTGGACTTCAGTGGCCAAGGCT
TCAGCGAGAAGGACTTGGAACAGGCCCTGGCTGTTTTCTCGGGCACCCCTGGGGGCTTACACCCAGCCTT
GTGCTCCCTCAACCTGAGGGGTACCCGAGTTACCCCAAGCACGGTCAGTTCTGTGATTAGTGGTTGCCCG
GGGCTGCTGTATCTTAACCTGGAGTCCTGTCGTTGCCTCCCCCGAGGTCTGAAGCGCGTCTACCGGGGCC
TGGAGGAAGTCCAGTGGTGTCTAGAGCAGCTACTTACCAGCCCGCCCTCTGCCAAAGAGCCCACTTAG

Translation (535 aa):
MAPVASRRVRRRVRSSKRPDARGRSAEDWWWDRLAPRGSGYHLLQADSMLLVLPDLEPPRARAHRRARRR
APRSLARGPTAVAKPRTKPRPEPSLDQGLDSGWGDRIPLEVLVHIFGLLVAAHGPMPFLGRAARVCRHWH
EATSHPSLWHTVTLSPSLVGRAGKGNLKGEKKLLACLEWLVPNRFSQLQSLTLIHWKSQVHSVLELVSKF
CPRLTFLKLSDCHTVTAETLVMLARACCQLHSLDLHHSMVESTAVVSFLEEAGSRMRKLWLTYSSQTTAI
LGALLDNCCPQLQVLQVSTGMNCNNTPLQLPVEALQKGCPQLQVLRLLNLIWLPKPCGRGVPQGPGFPSL
EELCLAGSTCNFVSNEVLGRLLHRSPKLRMLDLRGCARVTPSGLCHLPCQELEQLYLGLYGISDGLTLAK
DGSPLLTRKWYHTLRELDFSGQGFSEKDLEQALAVFSGTPGGLHPALCSLNLRGTRVTPSTVSSVISGCP
GLLYLNLESCRCLPRGLKRVYRGLEEVQWCLEQLLTSPPSAKEPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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