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Report for CCDS25917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25917.1 Public Mus musculus 12 Psma6 23 108 98 CCDS HistoryNCBI Gene:26443Re-query CCDS DB by CCDS ID:25917.1Re-query CCDS DB by GeneID:26443See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25917.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021412.8 ENSMUSP00000021412.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021412.8Link to Ensembl Protein Viewer:ENSMUSP00000021412.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021412Re-query CCDS DB by Protein ID:ENSMUSP00000021412
Original member Current member NCBI NM_011968.3 NP_036098.1 Accepted alive Link to Nucleotide Sequence:NM_011968.3Link to Protein Sequence:NP_036098.1Re-query CCDS DB by Nucleotide ID:NM_011968Re-query CCDS DB by Protein ID:NP_036098Link to BLAST:NP_036098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036098.1 246 Q9QUM9 246 100% 0 0

Chromosomal Locations for CCDS 25917.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55398916 55398991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55407469 55407563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55408002 55408083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55410127 55410282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55412187 55412365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55414404 55414498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55418237 55418294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGTCCCGGGGTTCCAGCGCCGGTTTTGACCGTCACATTACTATCTTCTCTCCCGAGGGCCGACTCTACC
AAGTAGAATATGCTTTTAAGGCTATTAACCAGGGTGGACTTACATCTGTTGCTGTCAGAGGAAAGGACTG
TGCAGTTATTGTCACACAGAAGAAAGTACCCGACAAACTACTGGATTCCAGCACAGTGACTCACTTGTTC
AAGATAACGGAAAGCATTGGCTGTGTGATGACAGGAATGACAGCTGACAGCAGATCCCAGGTACAGAGGG
CACGCTATGAGGCAGCTAATTGGAAATACAAGTATGGCTATGAAATTCCTGTGGACATGCTGTGCAAAAG
AATTGCTGATATTTCTCAAGTCTACACACAGAACGCTGAAATGAGGCCACTCGGTTGTTGTATGATTTTA
ATCGGTATCGATGAAGAGCAAGGCCCTCAAGTGTACAAGTGTGATCCTGCAGGTTACTACTGTGGCTTTA
AAGCCACGGCGGCAGGAGTTAAACAAACAGAGTCAACCAGCTTCCTTGAAAAGAAAGTGAAGAAGAAATT
TGATTGGACATTTGAACAGACAGTGGAAACTGCAATTACATGCCTGTCTACTGTTCTGTCGATTGACTTC
AAACCTTCAGAAATAGAAGTTGGAGTAGTTACAGTTGAAAATCCTAAATTCAGGATTCTTACTGAAGCAG
AGATTGACGCTCACCTTGTTGCTCTAGCAGAGAGAGACTGA

Translation (246 aa):
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLF
KITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMIL
IGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDF
KPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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