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Report for CCDS25684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25684.1 Public Mus musculus 11 Septin9 23 108 98 CCDS HistoryNCBI Gene:53860Re-query CCDS DB by CCDS ID:25684.1Re-query CCDS DB by GeneID:53860See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25684.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100193.7 ENSMUSP00000097767.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100193.7Link to Ensembl Protein Viewer:ENSMUSP00000097767.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000100193Re-query CCDS DB by Protein ID:ENSMUSP00000097767
Original member Current member EBI ENSMUST00000106349.1 ENSMUSP00000101956.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106349.1Link to Ensembl Protein Viewer:ENSMUSP00000101956.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106349Re-query CCDS DB by Protein ID:ENSMUSP00000101956
Original member Current member NCBI NM_001113488.1 NP_001106960.1 Accepted alive Link to Nucleotide Sequence:NM_001113488.1Link to Protein Sequence:NP_001106960.1Re-query CCDS DB by Nucleotide ID:NM_001113488Re-query CCDS DB by Protein ID:NP_001106960Link to BLAST:NP_001106960.1
Original member Current member NCBI NM_017380.2 NP_059076.1 Accepted alive Link to Nucleotide Sequence:NM_017380.2Link to Protein Sequence:NP_059076.1Re-query CCDS DB by Nucleotide ID:NM_017380Re-query CCDS DB by Protein ID:NP_059076Link to BLAST:NP_059076.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106960.1 334 Q80UG5-2 334 100% 0 0
NP_059076.1 334 Q80UG5-2 334 100% 0 0

Chromosomal Locations for CCDS 25684.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 117351461 117351620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117352149 117352277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117352607 117352688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117353088 117353225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117354810 117354927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117356335 117356430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117356613 117356709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117359419 117359470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117360423 117360555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGCTGACAACCCTAGAGATGCCATGCTCAAGCAGGCCCCCGCGTCACGGAACGAAAAGGCCCCCATGG
AGTTCGGCTATGTGGGGATCGACTCCATCCTGGAGCAGATGCGCAGGAAGGCTATGAAACAGGGCTTCGA
GTTTAACATCATGGTGGTTGGGCAGAGCGGCCTCGGGAAGTCCACTTTAATCAATACCCTCTTCAAGTCC
AAAATCAGCCGGAAGTCGGTGCAGCCCACCTCGGAGGAACGCATCCCCAAGACGATCGAAATCAAGTCGA
TCACCCACGATATTGAAGAGAAGGGGGTTCGAATGAAGCTGACAGTGATTGACACGCCGGGCTTCGGAGA
CCACATCAACAATGAGAACTGCTGGCAGCCCATTATGAAGTTCATCAATGACCAATATGAGAAGTACCTG
CAGGAGGAAGTCAACATCAACCGGAAGAAGCGCATTCCCGACACCCGTGTCCACTGCTGCCTCTACTTCA
TCCCAGCCACCGGCCACTCGCTCAGGCCCCTGGACATTGAATTCATGAAGCGCCTAAGCAAAGTGGTGAA
CATTGTCCCAGTCATCGCCAAGGCTGACACGCTGACCCTGGAGGAGAGGGTCTACTTCAAACAGCGGATC
ACTGCAGACCTGCTGTCCAACGGCATTGACGTGTACCCGCAGAAGGAGTTTGATGAGGACGCAGAAGACC
GGCTGGTGAACGAAAAGTTCCGGGAGATGATCCCATTTGCTGTGGTGGGCAGCGACCATGAGTATCAAGT
CAATGGCAAGAGGATTCTGGGAAGGAAGACCAAGTGGGGCACTATCGAAGTTGAGAATACCACTCACTGT
GAATTTGCTTACCTGCGGGATCTCCTTATCAGGACGCACATGCAAAACATCAAAGACATCACCAGCAACA
TCCACTTCGAAGCCTACCGAGTGAAACGCCTCAACGAGGGCAACAGCGCCATGGCCAACGGGATCGAGAA
GGAGCCGGAAGCCCAGGAGATGTAG

Translation (334 aa):
MADNPRDAMLKQAPASRNEKAPMEFGYVGIDSILEQMRRKAMKQGFEFNIMVVGQSGLGKSTLINTLFKS
KISRKSVQPTSEERIPKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYL
QEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVYFKQRI
TADLLSNGIDVYPQKEFDEDAEDRLVNEKFREMIPFAVVGSDHEYQVNGKRILGRKTKWGTIEVENTTHC
EFAYLRDLLIRTHMQNIKDITSNIHFEAYRVKRLNEGNSAMANGIEKEPEAQEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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