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Leuciscinae rhodopsin (RHO) gene, partial cds.

PopSet: 2427552596

Study Details

Monogeneans and chubs: Ancient host-parasite system under the looking glass

Benovics,M., Vukic,J., Sanda,R., Nejat,F., Charmpila,E.A., Buj,I., Shumka,S., Porcelloti,S., Tarkan,S.A., Aksu,S., Emiroglu,O. and Simkova,A.

(2023) Mol Phylogenet Evol 179:107667

PMID:: 36400419

Sequences in this data set

OP762400.1Squalius pyrenaicus isolate SQPY7P rhodopsin (RHO) gene, partial cds
OP762399.1Squalius carolitertii isolate SQCA5 rhodopsin (RHO) gene, partial cds
OP762398.1Squalius pyrenaicus isolate SQPY5C rhodopsin (RHO) gene, partial cds
OP762397.1Squalius torgalensis isolate SQTO1 rhodopsin (RHO) gene, partial cds
OP762396.1Squalius aradensis isolate SQAR2 rhodopsin (RHO) gene, partial cds
OP762395.1Squalius lepidus isolate SQLE2 rhodopsin (RHO) gene, partial cds
OP762394.1Squalius cephalus isolate Mva1 rhodopsin (RHO) gene, partial cds
OP762393.1Squalius orpheus isolate SQOR1 rhodopsin (RHO) gene, partial cds
OP762392.1Squalius orpheus isolate SQOR15 rhodopsin (RHO) gene, partial cds
OP762391.1Squalius prespensis isolate SQPR5 rhodopsin (RHO) gene, partial cds
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Alignment

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Article reporting this data set

Monogeneans and chubs: Ancient host-parasite system under the looking glass. [Mol Phylogenet Evol. 2023]
Monogeneans and chubs: Ancient host-parasite system under the looking glass.
Benovics M, Vukić J, Šanda R, Nejat F, Charmpila EA, Buj I, Shumka S, Porcelloti S, Tarkan SA, Aksu S, et al. Mol Phylogenet Evol. 2023 Feb; 179:107667. Epub 2022 Nov 15.

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Leuciscinae bone morphogenetic protein 4 (BMP) gene, partial cds.
Leuciscinae bone morphogenetic protein 4 (BMP) gene, partial cds.
phylogenetic study, 28 sequences
Leuciscinae recombination activating protein 1 (RAG1) gene, partial cds.
Leuciscinae recombination activating protein 1 (RAG1) gene, partial cds.
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Leuciscinae cytochrome b (cytb) gene, partial cds; mitochondrial.
Leuciscinae cytochrome b (cytb) gene, partial cds; mitochondrial.
phylogenetic study, 22 sequences

Related information

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Taxonomy
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Nucleotide
Nucleotide component of population set

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Leuciscinae rhodopsin (RHO) gene, partial cds.
Leuciscinae rhodopsin (RHO) gene, partial cds.
PopSet: 2427552596

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