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Chytridiomycetes 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.

PopSet: 530788911

Study Details

Phylogeny of the genus Synchytrium and the development of TaqMan PCR assay for sensitive detection of Synchytrium endobioticum in soil.

Smith,D.S., Rocheleau,H., Chapados,J.T., Abbott,C., Ribero,S., Redhead,S.A., Levesque,C.A. and De Boer,S.H.

(2014) Phytopathology 104:(4)422-432

PMID:
24328493
Citation

Sequences in this data set

  • KF160879.1Synchytrium taraxaci voucher DAOM_132416 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
  • KF160878.1Synchytrium stachydis voucher DAOM_191879 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
  • KF160877.1Synchytrium plantagineum voucher DAOM_Dearness2430 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence
  • KF160876.1Synchytrium perforatum voucher DAOM_214019 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence
  • KF160875.1Synchytrium papillatum voucher DAOM_192609 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
  • KF160874.1Synchytrium fulgens voucher DAOM_24377 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence
  • KF160873.1Synchytrium epilobii voucher DAOM_83668 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
  • KF160872.1Synchytrium endobioticum voucher DAOM_Dearness3250 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
  • KF160871.1Synchytrium endobioticum voucher DAOM_229326 28S ribosomal RNA gene, partial sequence; 28S-18S ribosomal RNA intergenic spacer, 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
  • KF160870.1Synchytrium endobioticum voucher DAOM_185328 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
  • more...

Alignment

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