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Select item 98281001.

Effects of green tide on microbial communities in waters of the Jiangsu coastal area, China

Yiming Yuan, Biyun Luo, Zhien Li, Yanlong He, Lihua Xia, Yutao Qin, Teng Wang, Keyi Ma

Water Environ Res. 2022 Oct; 94(10): e10797. Published online 2022 Oct 17. doi: 10.1002/wer.10797

PMCID:: PMC9828100

Abstract Article PDF–2.3M

Select item 91285092.

Host-Associated Phages Disperse across the Extraterrestrial Analogue Antarctica

Janina Rahlff, Till L. V. Bornemann, Anna Lopatina, Konstantin Severinov, Alexander J. Probst

Appl Environ Microbiol. 2022 May; 88(10): e00315-22. Published online 2022 May 2. doi: 10.1128/aem.00315-22

PMCID:: PMC9128509

Abstract Article PDF–2.0M

Select item 73194793.

Biotic formation of methylmercury: A bio–physico–chemical conundrum

Andrea G. Bravo, Claudia Cosio

Limnol Oceanogr. 2020 May; 65(5): 1010–1027. Published online 2019 Nov 12. doi: 10.1002/lno.11366

PMCID:: PMC7319479

Abstract Article PDF–574K

Select item 63744344.

Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria

Elham Karimi, Tina Keller-Costa, Beate M. Slaby, Cymon J. Cox, Ulisses N. da Rocha, Ute Hentschel, Rodrigo Costa

Sci Rep. 2019; 9: 1999. Published online 2019 Feb 13. doi: 10.1038/s41598-019-38737-x

PMCID:: PMC6374434

Abstract Article PDF–3.9M

Select item 63557935.

Marine biofilms constitute a bank of hidden microbial diversity and functional potential

Weipeng Zhang, Wei Ding, Yong-Xin Li, Chunkit Tam, Salim Bougouffa, Ruojun Wang, Bite Pei, Hoyin Chiang, Pokman Leung, Yanhong Lu, Jin Sun, He Fu, Vladimir B Bajic, Hongbin Liu, Nicole S. Webster, Pei-Yuan Qian

Nat Commun. 2019; 10: 517. Published online 2019 Jan 31. doi: 10.1038/s41467-019-08463-z

PMCID:: PMC6355793

Abstract Article PDF–1.9M

Select item 57909206.

Metagenomes Reveal Global Distribution of Bacterial Steroid Catabolism in Natural, Engineered, and Host Environments

Johannes Holert, Erick Cardenas, Lee H. Bergstrand, Elena Zaikova, Aria S. Hahn, Steven J. Hallam, William W. Mohn

mBio. 2018 Jan-Feb; 9(1): e02345-17. Published online 2018 Jan 30. doi: 10.1128/mBio.02345-17

PMCID:: PMC5790920

Abstract Article PDF–1.6M

Select item 50992377.

An Enrichment of CRISPR and Other Defense-Related Features in Marine Sponge-Associated Microbial Metagenomes

Hannes Horn, Beate M. Slaby, Martin T. Jahn, Kristina Bayer, Lucas Moitinho-Silva, Frank Förster, Usama R. Abdelmohsen, Ute Hentschel

Front Microbiol. 2016; 7: 1751. Published online 2016 Nov 8. doi: 10.3389/fmicb.2016.01751

PMCID:: PMC5099237

Abstract Article PDF–5.9M

Select item 42528378.

Mapping the Inner Workings of the Microbiome: Genomic- and Metagenomic-Based Study of Metabolism and Metabolic Interactions in the Human Microbiome

Ohad Manor, Roie Levy, Elhanan Borenstein

Cell Metab. Author manuscript; available in PMC 2015 Nov 4.

Published in final edited form as: Cell Metab. 2014 Nov 4; 20(5): 742–752. Published online 2014 Aug 28. doi: 10.1016/j.cmet.2014.07.021

PMCID:: PMC4252837

Abstract Article PDF–308K

Select item 38690129.

Physiologic and metagenomic attributes of the rhodoliths forming the largest CaCO₃ bed in the South Atlantic Ocean

Giselle S Cavalcanti, Gustavo B Gregoracci, Eidy O dos Santos, Cynthia B Silveira, Pedro M Meirelles, Leila Longo, Kazuyoshi Gotoh, Shota Nakamura, Tetsuya Iida, Tomoo Sawabe, Carlos E Rezende, Ronaldo B Francini-Filho, Rodrigo L Moura, Gilberto M Amado-Filho, Fabiano L Thompson

ISME J. 2014 Jan; 8(1): 52–62. Published online 2013 Aug 29. doi: 10.1038/ismej.2013.133

PMCID:: PMC3869012

Abstract Article PDF–1.9M

Select item 332450610.

Finding a Needle in the Virus Metagenome Haystack - Micro-Metagenome Analysis Captures a Snapshot of the Diversity of a Bacteriophage Armoire

Jessica Ray, Michael Dondrup, Sejal Modha, Ida Helene Steen, Ruth-Anne Sandaa, Martha Clokie

PLoS One. 2012; 7(4): e34238. Published online 2012 Apr 11. doi: 10.1371/journal.pone.0034238

PMCID:: PMC3324506

Abstract Article PDF–482K

Select item 310124611.

Going Deeper: Metagenome of a Hadopelagic Microbial Community

Emiley A. Eloe, Douglas W. Fadrosh, Mark Novotny, Lisa Zeigler Allen, Maria Kim, Mary-Jane Lombardo, Joyclyn Yee-Greenbaum, Shibu Yooseph, Eric E. Allen, Roger Lasken, Shannon J. Williamson, Douglas H. Bartlett

PLoS One. 2011; 6(5): e20388. Published online 2011 May 24. doi: 10.1371/journal.pone.0020388

PMCID:: PMC3101246

Abstract Article PDF–1.2M

Select item 703986312.

Metagenomic Insights Into the Cycling of Dimethylsulfoniopropionate and Related Molecules in the Eastern China Marginal Seas

Delei Song, Yunhui Zhang, Ji Liu, Haohui Zhong, Yanfen Zheng, Shun Zhou, Min Yu, Jonathan D. Todd, Xiao-Hua Zhang

Front Microbiol. 2020; 11: 157. Published online 2020 Feb 18. doi: 10.3389/fmicb.2020.00157

PMCID:: PMC7039863

Abstract Article PDF–7.2M

Select item 679425813.

In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes

Karen Krüger, Meghan Chafee, T. Ben Francis, Tijana Glavina del Rio, Dörte Becher, Thomas Schweder, Rudolf I. Amann, Hanno Teeling

ISME J. 2019 Nov; 13(11): 2800–2816. Published online 2019 Jul 17. doi: 10.1038/s41396-019-0476-y

PMCID:: PMC6794258

Abstract Article PDF–3.6M

Select item 638128114.

Evolutionary Model of Cluster Divergence of the Emergent Marine Pathogen Vibrio vulnificus: From Genotype to Ecotype

Mario López-Pérez, Jane M. Jayakumar, Jose M. Haro-Moreno, Asier Zaragoza-Solas, Geethika Reddi, Francisco Rodriguez-Valera, Orr H. Shapiro, Munirul Alam, Salvador Almagro-Moreno

mBio. 2019 Jan-Feb; 10(1): e02852-18. Published online 2019 Feb 19. doi: 10.1128/mBio.02852-18

PMCID:: PMC6381281

Abstract Article PDF–5.7M

Select item 619434715.

Metagenomics Reveals Microbial Diversity and Metabolic Potentials of Seawater and Surface Sediment From a Hadal Biosphere at the Yap Trench

Xinxu Zhang, Wei Xu, Yang Liu, Mingwei Cai, Zhuhua Luo, Meng Li

Front Microbiol. 2018; 9: 2402. Published online 2018 Oct 12. doi: 10.3389/fmicb.2018.02402

PMCID:: PMC6194347

Abstract Article PDF–2.4M

Select item 549855016.

Microbiome of Trichodesmium Colonies from the North Pacific Subtropical Gyre

Mary R. Gradoville, Byron C. Crump, Ricardo M. Letelier, Matthew J. Church, Angelicque E. White

Front Microbiol. 2017; 8: 1122. Published online 2017 Jul 6. doi: 10.3389/fmicb.2017.01122

Correction in:: Front Microbiol. 2017; 8: 1780.

PMCID:: PMC5498550

Abstract Article PDF–2.6M

Select item 509312017.

Bacterial Human Virulence Genes across Diverse Habitats As Assessed by In silico Analysis of Environmental Metagenomes

Ditte A. Søborg, Niels B. Hendriksen, Mogens Kilian, Jan H. Christensen, Niels Kroer

Front Microbiol. 2016; 7: 1712. Published online 2016 Nov 3. doi: 10.3389/fmicb.2016.01712

PMCID:: PMC5093120

Abstract Article PDF–1.7M

Select item 475024618.

Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Vincent Lacroix, Éric Rivals, Claire Lemaitre, Vincent Miele, Gustavo Sacomoto, Camille Marchet, Bastien Cazaux, Amal Zine El Aabidine, Leena Salmela, Susete Alves-Carvalho, Alexan Andrieux, Raluca Uricaru, Pierre Peterlongo

Gigascience. 2016; 5: 9. Published online 2016 Feb 11. doi: 10.1186/s13742-015-0105-2