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Items: 12

Select item 107678561.

NCBI GEO: archive for gene expression and epigenomics data sets: 23-year update

Emily Clough, Tanya Barrett, Stephen E Wilhite, Pierre Ledoux, Carlos Evangelista, Irene F Kim, Maxim Tomashevsky, Kimberly A Marshall, Katherine H Phillippy, Patti M Sherman, Hyeseung Lee, Naigong Zhang, Nadezhda Serova, Lukas Wagner, Vadim Zalunin, Andrey Kochergin, Alexandra Soboleva

Nucleic Acids Res. 2024 Jan 5; 52(D1): D138–D144. Published online 2023 Nov 2. doi: 10.1093/nar/gkad965

PMCID:: PMC10767856

Abstract Article PDF–891K

Select item 49443842.

The Gene Expression Omnibus database

Emily Clough, Tanya Barrett

Methods Mol Biol. Author manuscript; available in PMC 2016 Jul 14.

Published in final edited form as: Methods Mol Biol. 2016; 1418: 93–110. doi: 10.1007/978-1-4939-3578-9_5

PMCID:: PMC4944384

Abstract Article PDF–555K

Select item 35310843.

NCBI GEO: archive for functional genomics data sets—update

Tanya Barrett, Stephen E. Wilhite, Pierre Ledoux, Carlos Evangelista, Irene F. Kim, Maxim Tomashevsky, Kimberly A. Marshall, Katherine H. Phillippy, Patti M. Sherman, Michelle Holko, Andrey Yefanov, Hyeseung Lee, Naigong Zhang, Cynthia L. Robertson, Nadezhda Serova, Sean Davis, Alexandra Soboleva

Nucleic Acids Res. 2013 Jan; 41(Database issue): D991–D995. Published online 2012 Nov 26. doi: 10.1093/nar/gks1193

PMCID:: PMC3531084

Abstract Article PDF–3.1M

Select item 33417984.

Strategies to Explore Functional Genomics Data Sets in NCBI’s GEO Database

Stephen E. Wilhite, Tanya Barrett

Methods Mol Biol. Author manuscript; available in PMC 2012 Jul 1.

Published in final edited form as: Methods Mol Biol. 2012; 802: 41–53. doi: 10.1007/978-1-61779-400-1_3

PMCID:: PMC3341798

Abstract Article PDF–802K

Select item 30137365.

NCBI GEO: archive for functional genomics data sets—10 years on

Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite, Pierre Ledoux, Carlos Evangelista, Irene F. Kim, Maxim Tomashevsky, Kimberly A. Marshall, Katherine H. Phillippy, Patti M. Sherman, Rolf N. Muertter, Michelle Holko, Oluwabukunmi Ayanbule, Andrey Yefanov, Alexandra Soboleva

Nucleic Acids Res. 2011 Jan; 39(Database issue): D1005–D1010. Published online 2010 Nov 20. doi: 10.1093/nar/gkq1184

PMCID:: PMC3013736

Abstract Article PDF–2.0M

Select item 26865386.

NCBI GEO: archive for high-throughput functional genomic data

Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite, Pierre Ledoux, Dmitry Rudnev, Carlos Evangelista, Irene F. Kim, Alexandra Soboleva, Maxim Tomashevsky, Kimberly A. Marshall, Katherine H. Phillippy, Patti M. Sherman, Rolf N. Muertter, Ron Edgar

Nucleic Acids Res. 2009 Jan; 37(Database issue): D885–D890. Published online 2008 Oct 21. doi: 10.1093/nar/gkn764

PMCID:: PMC2686538

Abstract Article PDF–3.4M

Select item 22704037.

NCBI GEO standards and services for microarray data

Ron Edgar, Tanya Barrett

Nat Biotechnol. Author manuscript; available in PMC 2008 Mar 20.

Published in final edited form as: Nat Biotechnol. 2006 Dec; 24(12): 1471–1472. doi: 10.1038/nbt1206-1471

PMCID:: PMC2270403

Article PDF–155K

Select item 16697528.

NCBI GEO: mining tens of millions of expression profiles—database and tools update

Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite, Pierre Ledoux, Dmitry Rudnev, Carlos Evangelista, Irene F. Kim, Alexandra Soboleva, Maxim Tomashevsky, Ron Edgar

Nucleic Acids Res. 2007 Jan; 35(Database issue): D760–D765. Published online 2006 Nov 11. doi: 10.1093/nar/gkl887

PMCID:: PMC1669752

Abstract Article PDF–295K

Select item 16199009.

Gene Expression Omnibus (GEO): Microarray data storage, submission, retrieval, and analysis

Tanya Barrett, Ron Edgar

Methods Enzymol. Author manuscript; available in PMC 2006 Oct 23.

Published in final edited form as: Methods Enzymol. 2006; 411: 352–369. doi: 10.1016/S0076-6879(06)11019-8

PMCID:: PMC1619900

Abstract Article PDF–594K

Select item 161989910.

Mining Microarray Data at NCBI’s Gene Expression Omnibus (GEO)

Tanya Barrett, Ron Edgar

Methods Mol Biol. Author manuscript; available in PMC 2006 Oct 23.

Published in final edited form as: Methods Mol Biol. 2006; 338: 175–190. doi: 10.1385/1-59745-097-9:175

PMCID:: PMC1619899

Abstract Article PDF–545K

Select item 53997611.

NCBI GEO: mining millions of expression profiles—database and tools

Tanya Barrett, Tugba O. Suzek, Dennis B. Troup, Stephen E. Wilhite, Wing-Chi Ngau, Pierre Ledoux, Dmitry Rudnev, Alex E. Lash, Wataru Fujibuchi, Ron Edgar

Nucleic Acids Res. 2005 Jan 1; 33(Database Issue): D562–D566. Published online 2004 Dec 17. doi: 10.1093/nar/gki022