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Items: 13

Select item 52152451.

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

Léa Siegwald, Hélène Touzet, Yves Lemoine, David Hot, Christophe Audebert, Ségolène Caboche

PLoS One. 2017; 12(1): e0169563. Published online 2017 Jan 4. doi: 10.1371/journal.pone.0169563

PMCID:: PMC5215245

Abstract Article PDF–3.1M

Select item 47870012.

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

Melanie Schirmer, Rosalinda D’Amore, Umer Z. Ijaz, Neil Hall, Christopher Quince

BMC Bioinformatics. 2016; 17: 125. Published online 2016 Mar 11. doi: 10.1186/s12859-016-0976-y

PMCID:: PMC4787001

Abstract Article PDF–1.7M

Select item 38471443.

Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme

Lorenzo Carretero-Paulet, Agnieszka Lipska, Jordi Pérez-Gil, Félix J Sangari, Victor A Albert, Manuel Rodríguez-Concepción

BMC Evol Biol. 2013; 13: 180. Published online 2013 Sep 3. doi: 10.1186/1471-2148-13-180

PMCID:: PMC3847144

Abstract Article PDF–1.9M

Select item 29746424.

Distribution Analysis of Hydrogenases in Surface Waters of Marine and Freshwater Environments

Martin Barz, Christian Beimgraben, Torsten Staller, Frauke Germer, Friederike Opitz, Claudia Marquardt, Christoph Schwarz, Kirstin Gutekunst, Klaus Heinrich Vanselow, Ruth Schmitz, Julie LaRoche, Rüdiger Schulz, Jens Appel

PLoS One. 2010; 5(11): e13846. Published online 2010 Nov 5. doi: 10.1371/journal.pone.0013846

PMCID:: PMC2974642

Abstract Article PDF–850K

Select item 78208105.

Engineering Photosynthetic Bioprocesses for Sustainable Chemical Production: A Review

Sheida Stephens, Radhakrishnan Mahadevan, D. Grant Allen

Front Bioeng Biotechnol. 2020; 8: 610723. Published online 2021 Jan 8. doi: 10.3389/fbioe.2020.610723

PMCID:: PMC7820810

Abstract Article PDF–1.8M

Select item 49304816.

Sugar Synthesis from CO₂ in Escherichia coli

Niv Antonovsky, Shmuel Gleizer, Elad Noor, Yehudit Zohar, Elad Herz, Uri Barenholz, Lior Zelcbuch, Shira Amram, Aryeh Wides, Naama Tepper, Dan Davidi, Yinon Bar-On, Tasneem Bareia, David G. Wernick, Ido Shani, Sergey Malitsky, Ghil Jona, Arren Bar-Even, Ron Milo

Cell. 2016 Jun 30; 166(1): 115–125. doi: 10.1016/j.cell.2016.05.064

PMCID:: PMC4930481

Abstract Article

Select item 47125527.

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

Rosalinda D’Amore, Umer Zeeshan Ijaz, Melanie Schirmer, John G. Kenny, Richard Gregory, Alistair C. Darby, Migun Shakya, Mircea Podar, Christopher Quince, Neil Hall

BMC Genomics. 2016; 17: 55. Published online 2016 Jan 14. doi: 10.1186/s12864-015-2194-9

PMCID:: PMC4712552

Abstract Article PDF–1.2M

Select item 33053268.

The Twin-Arginine Translocation Pathway in α-Proteobacteria Is Functionally Preserved Irrespective of Genomic and Regulatory Divergence

Pablo A. Nuñez, Marcelo Soria, Marisa D. Farber

PLoS One. 2012; 7(3): e33605. Published online 2012 Mar 15. doi: 10.1371/journal.pone.0033605

PMCID:: PMC3305326

Abstract Article PDF–2.3M

Select item 39276079.

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés

Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869

PMCID:: PMC3927607

Abstract Article PDF–2.0M

Select item 313586510.

Regulation of Multiple Carbon Monoxide Consumption Pathways in Anaerobic Bacteria

Stephen M. Techtmann, Albert S. Colman, Michael B. Murphy, Wendy S. Schackwitz, Lynne A. Goodwin, Frank T. Robb

Front Microbiol. 2011; 2: 147. Published online 2011 Jul 11. doi: 10.3389/fmicb.2011.00147

Correction in:: Front Microbiol. 2018; 9: 1016.

PMCID:: PMC3135865

Abstract Article PDF–2.5M

Select item 296312311.

Functional Promiscuity of Homologues of the Bacterial ArsA ATPases

Rostislav Castillo, Milton H. Saier, Jr.

Int J Microbiol. 2010; 2010: 187373. Published online 2010 Oct 20. doi: 10.1155/2010/187373

PMCID:: PMC2963123

Abstract Article PDF–1.5M

Select item 300948412.

Short clones or long clones? A simulation study on the use of paired reads in metagenomics

Suparna Mitra, Max Schubach, Daniel H Huson

BMC Bioinformatics. 2010; 11(Suppl 1): S12. Published online 2010 Jan 18. doi: 10.1186/1471-2105-11-S1-S12

PMCID:: PMC3009484

Abstract Article PDF–1.9M

Select item 207536513.

Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference

K. V. Srividhya, V. Alaguraj, G. Poornima, Dinesh Kumar, G. P. Singh, L. Raghavenderan, A. V. S. K. Mohan Katta, Preeti Mehta, S. Krishnaswamy

PLoS One. 2007; 2(11): e1193. Published online 2007 Nov 21. doi: 10.1371/journal.pone.0001193

PMCID:: PMC2075365

Abstract Article PDF–295K

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txid269796[Organism:noexp] (13)
PMC
MULTISPECIES: hypothetical protein [Bacillus]
MULTISPECIES: hypothetical protein [Bacillus]
gi|499514950|ref|WP_011201590.1|

Protein
Acusta redfieldi isolate YNLN11055 cytochrome oxidase subunit 1 (COI) gene, part...
Acusta redfieldi isolate YNLN11055 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial
gi|1934903040|gb|MN369705.1|

Nucleotide

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