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    SYT7 synaptotagmin 7 [ Homo sapiens (human) ]

    Gene ID: 9066, updated on 14-Nov-2024

    Summary

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    Official Symbol
    SYT7provided by HGNC
    Official Full Name
    synaptotagmin 7provided by HGNC
    Primary source
    HGNC:HGNC:11514
    See related
    Ensembl:ENSG00000011347 MIM:604146; AllianceGenome:HGNC:11514
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    IPCA7; IPCA-7; SYTVII; PCANAP7; SYT-VII
    Summary
    This gene is a member of the synaptotagmin gene family and encodes a protein similar to other family members that mediate calcium-dependent regulation of membrane trafficking in synaptic transmission. A similar protein in rodents mediates hormone secretion and lysosome exocytosis. In humans, expression of this gene has been associated with prostate cancer. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Oct 2011]
    Expression
    Biased expression in brain (RPKM 15.4), prostate (RPKM 13.8) and 12 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See SYT7 in Genome Data Viewer
    Location:
    11q12.2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (61513714..61588387, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (61502594..61577283, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (61281186..61348548, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61280313-61280926 Neighboring gene leucine rich repeat containing 10B Neighboring gene microRNA 4488 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61297435-61297934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61301414-61302353 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61302354-61303292 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3394 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3395 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3396 Neighboring gene uncharacterized LOC105369331 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61354237-61354816 Neighboring gene uncharacterized LOC101927495 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61355975-61356553 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:61366831-61367498 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61368167-61368834 Neighboring gene ribosomal protein lateral stalk subunit P0 pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:61393636-61394198 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:61394199-61394759 Neighboring gene Sharpr-MPRA regulatory region 3465 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:61396115-61397096 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61406067-61406567 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:61406607-61407134

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The 8-oxoguanine DNA glycosylase-synaptotagmin 7 pathway increases extracellular vesicle release and promotes tumour metastasis during oxidative stress.
      Title: The 8-oxoguanine DNA glycosylase-synaptotagmin 7 pathway increases extracellular vesicle release and promotes tumour metastasis during oxidative stress.
    2. SYT7 is a key player in increasing exosome secretion and promoting angiogenesis in non-small-cell lung cancer.
      Title: SYT7 is a key player in increasing exosome secretion and promoting angiogenesis in non-small-cell lung cancer.
    3. SYT7 plays a role in promoting thyroid cancer by mediating HMGB3 ubiquitination.
      Title: SYT7 plays a role in promoting thyroid cancer by mediating HMGB3 ubiquitination.
    4. Syt-7 overexpression predicts poor prognosis and promotes cell proliferation in hepatocellular carcinoma.
      Title: Syt-7 overexpression predicts poor prognosis and promotes cell proliferation in hepatocellular carcinoma.
    5. High SYT7 expression is associated with poor prognosis in human non-small cell lung carcinoma.
      Title: High SYT7 expression is associated with poor prognosis in human non-small cell lung carcinoma.
    6. Synaptotagmin-7 deficiency induces mania-like behavioral abnormalities through attenuating GluN2B activity.
      Title: Synaptotagmin-7 deficiency induces mania-like behavioral abnormalities through attenuating GluN2B activity.
    7. Silencing of synaptotagmin 7 regulates osteosarcoma cell proliferation, apoptosis, and migration.
      Title: Silencing of synaptotagmin 7 regulates osteosarcoma cell proliferation, apoptosis, and migration.
    8. The Syt7 mRNA level was significantly attenuated in the bipolar disorder patient plasma compared to the healthy controls.
      Title: Synaptotagmin-7 is a key factor for bipolar-like behavioral abnormalities in mice.
    9. Membrane-Binding Cooperativity and Coinsertion by C2AB Tandem Domains of Synaptotagmins 1 and 7
      Title: Membrane-Binding Cooperativity and Coinsertion by C2AB Tandem Domains of Synaptotagmins 1 and 7.
    10. The oncogenic role of SYT7 in lung cancer.the oncogenic roles of SYT7 in lung cancer.SYT7 interacts with P53 and to potentiate the interaction between P53 and MDM2.
      Title: Synaptotagmin-7, a binding protein of P53, inhibits the senescence and promotes the tumorigenicity of lung cancer cells.
    Submit: New GeneRIF Correction See all GeneRIFs (21)

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC150517

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables SNARE binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calcium ion sensor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium-dependent phospholipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium-dependent phospholipid binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables calcium-dependent phospholipid binding NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    enables calmodulin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylinositol-4,5-bisphosphate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in calcium ion regulated lysosome exocytosis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in calcium ion-regulated exocytosis of neurotransmitter ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in calcium-dependent activation of synaptic vesicle fusion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in phagocytosis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in phagosome-lysosome fusion ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in plasma membrane repair ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in positive regulation of calcium ion-dependent exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of bone remodeling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of calcium ion-dependent exocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of glucagon secretion ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of insulin secretion ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of phagocytosis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of synaptic vesicle endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in short-term synaptic potentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in synaptic vesicle recycling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in vesicle fusion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in vesicle-mediated cholesterol transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in axon IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in dense core granule IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in early phagosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in extracellular exosome HDA PubMed 
    located_in hippocampal mossy fiber to CA3 synapse IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in lysosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in peroxisome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in phagocytic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in presynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in synapse IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in synaptic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in synaptic vesicle ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    synaptotagmin-7
    Names
    prostate cancer-associated protein 7
    synaptotagmin VII

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252065.2 → NP_001238994.1  synaptotagmin-7 isoform 1

      See identical proteins and their annotated locations for NP_001238994.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AP002754, AP003108, BC042495, BC125171, BE644642, BM675410, BQ447018
      Consensus CDS
      CCDS58139.1
      UniProtKB/Swiss-Prot
      O43581
      Related
      ENSP00000444201.1, ENST00000540677.5
      Conserved Domains (2) summary
      cd08386
      Location:210 → 334
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:342 → 477
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    2. NM_001300773.2 → NP_001287702.1  synaptotagmin-7 isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) contains an alternate in-frame exon in place of another alternate in-frame exon compared to variant 1. The resulting isoform (3) has an alternate 44 aa internal segment in place of an alternate 75 aa internal segment compared to isoform 1.
      Source sequence(s)
      AP002754, AP003108, BC042495, BC125170, BE644642, BQ447018, CA868518
      Consensus CDS
      CCDS73298.1
      UniProtKB/Swiss-Prot
      O43581
      Related
      ENSP00000444568.1, ENST00000542836.5
      Conserved Domains (2) summary
      cd08386
      Location:179 → 303
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:311 → 446
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    3. NM_001365809.2 → NP_001352738.1  synaptotagmin-7 isoform 4

      Status: REVIEWED

      Source sequence(s)
      AP002754, AP003108, AP003559
      Consensus CDS
      CCDS91487.1
      Related
      ENSP00000439694.1, ENST00000539008.6
      Conserved Domains (3) summary
      cd08386
      Location:418 → 542
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:550 → 685
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7
      PHA03307
      Location:143 → 310
      PHA03307; transcriptional regulator ICP4; Provisional

    4. NM_001370210.1 → NP_001357139.1  synaptotagmin-7 isoform 5

      Status: REVIEWED

      Source sequence(s)
      AP003108, AP003559
      Conserved Domains (2) summary
      cd08386
      Location:231 → 355
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cl14603
      Location:363 → 466
      C2; C2 domain

    5. NM_001370211.1 → NP_001357140.1  synaptotagmin-7 isoform 6

      Status: REVIEWED

      Source sequence(s)
      AP002754, AP003108, AP003559
      Conserved Domains (2) summary
      cd08386
      Location:135 → 259
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cl14603
      Location:267 → 370
      C2; C2 domain

    6. NM_001411007.1 → NP_001397936.1  synaptotagmin-7 isoform 7

      Status: REVIEWED

      Source sequence(s)
      AP002754, AP003108, AP003559
      Consensus CDS
      CCDS91486.1
      Related
      ENSP00000437720.1, ENST00000535826.5

    7. NM_004200.4 → NP_004191.2  synaptotagmin-7 isoform 2

      See identical proteins and their annotated locations for NP_004191.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an exon in the coding region but maintains the reading frame, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AP002754, AP003108, BC042495, BC125170, BE644642, BM675410, BQ447018
      Consensus CDS
      CCDS31577.1
      UniProtKB/Swiss-Prot
      F5GZC2, F5GZU9, F5H126, F5H1N2, F5H6C1, O43581, Q08AH6
      Related
      ENSP00000263846.4, ENST00000263846.8
      Conserved Domains (2) summary
      cd08386
      Location:135 → 259
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:267 → 402
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      61513714..61588387 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011545343.3 → XP_011543645.1  synaptotagmin-7 isoform X12

      Conserved Domains (2) summary
      cd08386
      Location:141 → 265
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:273 → 408
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    2. XM_011545340.3 → XP_011543642.1  synaptotagmin-7 isoform X8

      Conserved Domains (2) summary
      cd08386
      Location:216 → 340
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:348 → 483
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    3. XM_011545337.3 → XP_011543639.1  synaptotagmin-7 isoform X3

      Conserved Domains (2) summary
      cd08386
      Location:380 → 504
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:512 → 647
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    4. XM_011545341.3 → XP_011543643.1  synaptotagmin-7 isoform X9

      Conserved Domains (2) summary
      cd08386
      Location:185 → 309
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:317 → 452
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    5. XM_011545338.3 → XP_011543640.1  synaptotagmin-7 isoform X5

      Conserved Domains (2) summary
      cd08386
      Location:349 → 473
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:481 → 616
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    6. XM_011545339.3 → XP_011543641.1  synaptotagmin-7 isoform X7

      Conserved Domains (2) summary
      cd08386
      Location:260 → 384
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:392 → 527
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    7. XM_011545336.3 → XP_011543638.1  synaptotagmin-7 isoform X2

      Conserved Domains (2) summary
      cd08386
      Location:383 → 507
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:515 → 650
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    8. XM_011545335.3 → XP_011543637.1  synaptotagmin-7 isoform X1

      Conserved Domains (2) summary
      cd08386
      Location:424 → 548
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:556 → 691
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    9. XM_005274384.3 → XP_005274441.1  synaptotagmin-7 isoform X4

      Conserved Domains (3) summary
      cd08386
      Location:374 → 498
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:506 → 641
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7
      PHA03307
      Location:99 → 266
      PHA03307; transcriptional regulator ICP4; Provisional

    10. XM_005274385.5 → XP_005274442.1  synaptotagmin-7 isoform X6

      UniProtKB/Swiss-Prot
      O43581
      Related
      ENSP00000444019.1, ENST00000542670.5
      Conserved Domains (2) summary
      cd08386
      Location:343 → 467
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:475 → 610
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    11. XM_005274387.5 → XP_005274444.1  synaptotagmin-7 isoform X10

      Conserved Domains (2) summary
      cd08386
      Location:181 → 305
      C2A_Synaptotagmin-7; C2A domain first repeat present in Synaptotagmin 7
      cd08405
      Location:313 → 448
      C2B_Synaptotagmin-7; C2 domain second repeat present in Synaptotagmin 7

    12. XM_011545342.3 → XP_011543644.1  synaptotagmin-7 isoform X11

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      61502594..61577283 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054370458.1 → XP_054226433.1  synaptotagmin-7 isoform X9

    2. XM_054370461.1 → XP_054226436.1  synaptotagmin-7 isoform X12

    3. XM_054370456.1 → XP_054226431.1  synaptotagmin-7 isoform X7

    4. XM_054370450.1 → XP_054226425.1  synaptotagmin-7 isoform X1

    5. XM_054370452.1 → XP_054226427.1  synaptotagmin-7 isoform X3

    6. XM_054370451.1 → XP_054226426.1  synaptotagmin-7 isoform X2

    7. XM_054370454.1 → XP_054226429.1  synaptotagmin-7 isoform X5

    8. XM_054370457.1 → XP_054226432.1  synaptotagmin-7 isoform X8

    9. XM_054370453.1 → XP_054226428.1  synaptotagmin-7 isoform X4

    10. XM_054370455.1 → XP_054226430.1  synaptotagmin-7 isoform X6

    11. XM_054370459.1 → XP_054226434.1  synaptotagmin-7 isoform X10

    12. XM_054370460.1 → XP_054226435.1  synaptotagmin-7 isoform X11

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O43581.3 GenPept UniProtKB/Swiss-Prot:O43581

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