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    Zfp781b zinc finger protein 781B [ Mus musculus (house mouse) ]

    Gene ID: 331188, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Zfp781bprovided by MGI
    Official Full Name
    zinc finger protein 781Bprovided by MGI
    Primary source
    MGI:MGI:3696710
    See related
    Ensembl:ENSMUSG00000096718 AllianceGenome:MGI:3696710
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Zfp781; A130081B01
    Expression
    Broad expression in CNS E18 (RPKM 2.9), CNS E14 (RPKM 2.6) and 19 other tissues See more
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    Genomic context

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    See Zfp781b in Genome Data Viewer
    Location:
    10 C1; 10 39.72 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (81737512..81766655, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (81901911..81930512, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32687 Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene, 51777 Neighboring gene STARR-seq mESC enhancer starr_27349 Neighboring gene STARR-seq mESC enhancer starr_27350 Neighboring gene predicted gene, 19802 Neighboring gene predicted gene 8158

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 781

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368187.1 → NP_001355116.1  zinc finger protein 781 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC172027

    2. NM_001384187.1 → NP_001371116.1  zinc finger protein 781 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC172027
      Conserved Domains (3) summary
      COG5048
      Location:328 → 736
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:136 → 156
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 44
      KRAB; KRAB box

    3. NM_199062.2 → NP_951017.1  zinc finger protein 781 isoform 2

      See identical proteins and their annotated locations for NP_951017.1

      Status: VALIDATED

      Source sequence(s)
      AC172027
      Consensus CDS
      CCDS48649.1
      UniProtKB/TrEMBL
      Q0P5U5
      Related
      ENSMUSP00000151576.2, ENSMUST00000219144.2
      Conserved Domains (1) summary
      pfam01352
      Location:7 → 47
      KRAB; KRAB box

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      81737512..81766655 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036155857.1 → XP_036011750.1  zinc finger protein 781 isoform X1

      Conserved Domains (1) summary
      pfam01352
      Location:4 → 44
      KRAB; KRAB box
    Nucleotide Protein Strain
    Heading Accession and Version

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