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    LINC00929 long intergenic non-protein coding RNA 929 [ Homo sapiens (human) ]

    Gene ID: 503519, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC00929provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 929provided by HGNC
    Primary source
    HGNC:HGNC:48615
    See related
    Ensembl:ENSG00000259150 AllianceGenome:HGNC:48615
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.6) See more
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    Genomic context

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    See LINC00929 in Genome Data Viewer
    Location:
    15q12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (26115813..26133037)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (23856213..23873450)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (26360960..26378184)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2346 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6266 Neighboring gene uncharacterized LOC105370739 Neighboring gene tRNA-Glu (anticodon TTC) 2-2 Neighboring gene Sharpr-MPRA regulatory region 9219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26371289-26371981 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26375077-26375665 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26421889-26422390 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26422391-26422890 Neighboring gene NANOG hESC enhancer GRCh37_chr15:26476139-26476674 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26481073-26481711 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:26485506-26486446 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:26488201-26488985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26505515-26506014 Neighboring gene uncharacterized LOC124903568 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:26570561-26571281 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:26606040-26606210 Neighboring gene uncharacterized LOC105370740 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26655893-26656682 Neighboring gene long intergenic non-protein coding RNA 2248 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26707088-26707588

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Genome-wide meta-analyses of smoking behaviors in African Americans. David SP, et al. Transl Psychiatry, 2012 May 22. PMID 22832964, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038851.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      BC038777, BX117286
      Related
      ENST00000556159.6

    2. NR_038852.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon and includes three alternate exons, compared to variant 1.
      Source sequence(s)
      AI808329, BX117286
      Related
      ENST00000556213.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      26115813..26133037
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      23856213..23873450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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