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    LOC105379178 uncharacterized LOC105379178 [ Homo sapiens (human) ]

    Gene ID: 105379178, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC105379178
    Gene description
    uncharacterized LOC105379178
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward skin (RPKM 2.3) See more
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    Genomic context

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    See LOC105379178 in Genome Data Viewer
    Location:
    5q31.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (133111068..133124485, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (133630811..133644248, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit NDUFA4-like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23097 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16345 Neighboring gene Sharpr-MPRA regulatory region 5371 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:132386992-132387954 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132388919-132389881 Neighboring gene zinc finger CCHC-type containing 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132393803-132394303 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23101 Neighboring gene heat shock protein family A (Hsp70) member 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132531489-132531990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132535193-132535692 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:132555882-132557081 Neighboring gene ribosomal protein L6 pseudogene 15 Neighboring gene uncharacterized CTB-49A3.2 Neighboring gene follistatin like 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      133111068..133124485 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_948792.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      133630811..133644248 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007075949.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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