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    ATP2B4 ATPase plasma membrane Ca2+ transporting 4 [ Gallus gallus (chicken) ]

    Gene ID: 419934, updated on 10-Oct-2024

    Summary

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    Official Symbol
    ATP2B4provided by CGNC
    Official Full Name
    ATPase plasma membrane Ca2+ transporting 4provided by CGNC
    Primary source
    CGNC:2630
    See related
    Ensembl:ENSGALG00010027490
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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    Genomic context

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    See ATP2B4 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 26 NC_052557.1 (5251562..5288735)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 26 NC_052598.1 (5205294..5242482)

    Chromosome 26 - NC_052557.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107055169 Neighboring gene proline and arginine rich end leucine rich repeat protein Neighboring gene opticin Neighboring gene uncharacterized LOC121107641 Neighboring gene uncharacterized LOC107055168 Neighboring gene uncharacterized LOC124417405 Neighboring gene microRNA 7454

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Circadian miR-449c-5p regulates uterine Ca(2+) transport during eggshell calcification in chickens. Cui Z, et al. BMC Genomics, 2021 Oct 26. PMID 34702171, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Circadian miR-449c-5p regulates uterine Ca(2+) transport during eggshell calcification in chickens.
      Title: Circadian miR-449c-5p regulates uterine Ca(2+) transport during eggshell calcification in chickens.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type calcium transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables PDZ domain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plasma membrane calcium-transporting ATPase 4; plasma membrane calcium-transporting ATPase 2
    Names
    ATPase, Ca++ transporting, plasma membrane 4
    XP_004948504.1
    XP_015154447.1
    XP_015154448.1
    XP_015154450.1
    XP_040508978.1
    XP_040508979.1
    XP_040508980.1
    XP_040508981.1
    XP_040508982.1
    XP_040547083.1
    XP_040547085.1
    XP_040547086.1
    XP_040547087.1
    XP_040547088.1
    XP_040547089.1
    XP_040547090.1
    XP_040547092.1
    XP_040547093.1
    XP_040547094.1
    XP_046760106.1
    XP_046760108.1
    XP_046788994.1
    XP_418055.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052557.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      5251562..5288735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_418055.8 → XP_418055.4  plasma membrane calcium-transporting ATPase 4 isoform X6

      UniProtKB/TrEMBL
      A0A8V1AGR9
      Conserved Domains (2) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1093 → 1118
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    2. XM_040653044.2 → XP_040508978.1  plasma membrane calcium-transporting ATPase 4 isoform X1

      UniProtKB/TrEMBL
      E1C784
      Conserved Domains (1) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

    3. XM_015298961.4 → XP_015154447.1  plasma membrane calcium-transporting ATPase 4 isoform X3

      UniProtKB/TrEMBL
      A0A1D5PJX0, E1C784
      Related
      ENSGALP00010040788.1, ENSGALT00010066611.1
      Conserved Domains (2) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1093 → 1139
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    4. XM_015298964.4 → XP_015154450.1  plasma membrane calcium-transporting ATPase 4 isoform X7

      UniProtKB/TrEMBL
      A0A1D5PU07, A0A8V1AGR9
      Related
      ENSGALP00010040785.1, ENSGALT00010066606.1
      Conserved Domains (2) summary
      TIGR01517
      Location:12 → 1042
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1081 → 1106
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    5. XM_040653047.2 → XP_040508981.1  plasma membrane calcium-transporting ATPase 4 isoform X2

      UniProtKB/TrEMBL
      E1C784
      Conserved Domains (1) summary
      TIGR01517
      Location:12 → 1042
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

    6. XM_004948447.5 → XP_004948504.1  plasma membrane calcium-transporting ATPase 4 isoform X5

      UniProtKB/TrEMBL
      E1C784
      Conserved Domains (2) summary
      TIGR01517
      Location:12 → 1042
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1081 → 1127
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    7. XM_046904152.1 → XP_046760108.1  plasma membrane calcium-transporting ATPase 2 isoform X4

      Related
      ENSGALP00010040782.1, ENSGALT00010066600.1

    8. XM_040653046.2 → XP_040508980.1  plasma membrane calcium-transporting ATPase 4 isoform X1

      UniProtKB/TrEMBL
      E1C784
      Conserved Domains (1) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

    9. XM_040653045.2 → XP_040508979.1  plasma membrane calcium-transporting ATPase 4 isoform X1

      UniProtKB/TrEMBL
      E1C784
      Conserved Domains (1) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

    10. XM_015298962.4 → XP_015154448.1  plasma membrane calcium-transporting ATPase 4 isoform X3

      UniProtKB/TrEMBL
      A0A1D5PJX0, E1C784
      Conserved Domains (2) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1093 → 1139
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    11. XM_046904150.1 → XP_046760106.1  plasma membrane calcium-transporting ATPase 4 isoform X1

    12. XM_040653048.2 → XP_040508982.1  plasma membrane calcium-transporting ATPase 4 isoform X3

      UniProtKB/TrEMBL
      A0A1D5PJX0, E1C784
      Related
      ENSGALP00010040784.1, ENSGALT00010066603.1
      Conserved Domains (2) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1093 → 1139
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    RNA

    1. XR_006932148.1 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052598.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5205294..5242482
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040691159.2 → XP_040547093.1  plasma membrane calcium-transporting ATPase 4 isoform X6

      UniProtKB/TrEMBL
      A0A8V1AGR9
      Conserved Domains (2) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1093 → 1118
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    2. XM_040691149.2 → XP_040547083.1  plasma membrane calcium-transporting ATPase 4 isoform X1

      UniProtKB/TrEMBL
      E1C784
      Conserved Domains (1) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

    3. XM_040691154.2 → XP_040547088.1  plasma membrane calcium-transporting ATPase 4 isoform X3

      UniProtKB/TrEMBL
      A0A1D5PJX0, E1C784
      Conserved Domains (2) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1093 → 1139
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    4. XM_040691160.2 → XP_040547094.1  plasma membrane calcium-transporting ATPase 4 isoform X7

      UniProtKB/TrEMBL
      A0A1D5PU07, A0A8V1AGR9
      Conserved Domains (2) summary
      TIGR01517
      Location:12 → 1042
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1081 → 1106
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    5. XM_040691153.2 → XP_040547087.1  plasma membrane calcium-transporting ATPase 4 isoform X2

      UniProtKB/TrEMBL
      E1C784
      Conserved Domains (1) summary
      TIGR01517
      Location:12 → 1042
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

    6. XM_040691158.2 → XP_040547092.1  plasma membrane calcium-transporting ATPase 4 isoform X5

      UniProtKB/TrEMBL
      E1C784
      Conserved Domains (2) summary
      TIGR01517
      Location:12 → 1042
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1081 → 1127
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    7. XM_040691152.2 → XP_040547086.1  plasma membrane calcium-transporting ATPase 4 isoform X1

      UniProtKB/TrEMBL
      E1C784
      Conserved Domains (1) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

    8. XM_040691151.2 → XP_040547085.1  plasma membrane calcium-transporting ATPase 4 isoform X1

      UniProtKB/TrEMBL
      E1C784
      Conserved Domains (1) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

    9. XM_040691156.2 → XP_040547090.1  plasma membrane calcium-transporting ATPase 4 isoform X3

      UniProtKB/TrEMBL
      A0A1D5PJX0, E1C784
      Conserved Domains (2) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1093 → 1139
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    10. XM_046933038.1 → XP_046788994.1  plasma membrane calcium-transporting ATPase 4 isoform X1

    11. XM_040691155.2 → XP_040547089.1  plasma membrane calcium-transporting ATPase 4 isoform X3

      UniProtKB/TrEMBL
      A0A1D5PJX0, E1C784
      Conserved Domains (2) summary
      TIGR01517
      Location:12 → 1054
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1093 → 1139
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    RNA

    1. XR_006937147.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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