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    LINC01874 long intergenic non-protein coding RNA 1874 [ Homo sapiens (human) ]

    Gene ID: 727944, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01874provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1874provided by HGNC
    Primary source
    HGNC:HGNC:52693
    See related
    Ensembl:ENSG00000223985 AllianceGenome:HGNC:52693
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward kidney (RPKM 3.8) See more
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    Genomic context

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    See LINC01874 in Genome Data Viewer
    Location:
    2p25.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (490947..492655, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (489447..491155, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (490947..492655, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene collagen alpha-2(I) chain-like Neighboring gene uncharacterized LOC124907599 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_58516 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:444647-445148 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:445149-445648 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:495062-496261 Neighboring gene uncharacterized LOC100996637 Neighboring gene NANOG hESC enhancer GRCh37_chr2:513913-514495 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:527316-527838 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:527839-528360 Neighboring gene long intergenic non-protein coding RNA 1875

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • AC093326.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146436.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC093326

    2. NR_146437.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice junction compared to variant 1.
      Source sequence(s)
      AC093326
      Related
      ENST00000427398.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      490947..492655 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      489447..491155 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials