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    Pcnx1 pecanex 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 314288, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Pcnx1provided by RGD
    Official Full Name
    pecanex 1provided by RGD
    Primary source
    RGD:1306115
    See related
    EnsemblRapid:ENSRNOG00000007459 AllianceGenome:RGD:1306115
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Pcnx
    Summary
    Predicted to be located in membrane. Orthologous to human PCNX1 (pecanex 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 164.6), Lung (RPKM 157.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Pcnx1 in Genome Data Viewer
    Location:
    6q24
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (107296704..107433576)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (101565461..101702339)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (105611425..105747178)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 9 Neighboring gene uncharacterized LOC102552601 Neighboring gene 60S ribosomal protein L21-like Neighboring gene uncharacterized LOC102552673 Neighboring gene signal-induced proliferation-associated 1 like 1 Neighboring gene uncharacterized LOC134479448 Neighboring gene uncharacterized LOC102552965

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The mammalian gene pecanex 1 is differentially expressed during spermatogenesis. Geisinger A, et al. Biochim Biophys Acta, 2005 Apr 5. PMID 15777640

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. pecanex 1 could play an important role in the testis, related to spermatogenesis.
      Title: The mammalian gene pecanex 1 is differentially expressed during spermatogenesis.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    pecanex-like protein 1
    Names
    pecanex homolog 1
    pecanex homolog protein 1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001170347.1 → NP_001163818.1  pecanex-like protein 1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/Swiss-Prot
      E9PSU6
      UniProtKB/TrEMBL
      A0A8I6A512
      Related
      ENSRNOP00000010022.5, ENSRNOT00000010022.8
      Conserved Domains (2) summary
      pfam05041
      Location:1784 → 2008
      Pecanex_C; Pecanex protein (C-terminus)
      cl28033
      Location:323 → 615
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      107296704..107433576
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039112295.2 → XP_038968223.1  pecanex-like protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I6A512
      Related
      ENSRNOP00000087947.2, ENSRNOT00000108585.2
      Conserved Domains (2) summary
      PHA03307
      Location:323 → 615
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam05041
      Location:1784 → 2010
      Pecanex_C; Pecanex protein (C-terminus)

    2. XM_006240299.5 → XP_006240361.1  pecanex-like protein 1 isoform X2

      See identical proteins and their annotated locations for XP_006240361.1

      UniProtKB/TrEMBL
      A0A8I6A512, A6JDN9
      Conserved Domains (4) summary
      pfam05041
      Location:1779 → 2003
      Pecanex_C; Pecanex protein (C-terminus)
      pfam12730
      Location:1029 → 1276
      ABC2_membrane_4; ABC-2 family transporter protein
      pfam15772
      Location:429 → 539
      UPF0688; UPF0688 family
      cl11542
      Location:1396 → 1521
      EcsB; Bacterial ABC transporter protein EcsB

    3. XM_039112294.1 → XP_038968222.1  pecanex-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A512
      Conserved Domains (2) summary
      PHA03307
      Location:323 → 615
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam05041
      Location:1783 → 2009
      Pecanex_C; Pecanex protein (C-terminus)

    4. XM_063261934.1 → XP_063118004.1  pecanex-like protein 1 isoform X3

    5. XM_039112299.2 → XP_038968227.1  pecanex-like protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A8I6A512
      Conserved Domains (2) summary
      PHA03307
      Location:323 → 615
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam05041
      Location:1678 → 1904
      Pecanex_C; Pecanex protein (C-terminus)

    6. XM_006240302.5 → XP_006240364.1  pecanex-like protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8I6A512
      Conserved Domains (4) summary
      pfam05041
      Location:1673 → 1897
      Pecanex_C; Pecanex protein (C-terminus)
      pfam12730
      Location:923 → 1170
      ABC2_membrane_4; ABC-2 family transporter protein
      pfam15772
      Location:429 → 539
      UPF0688; UPF0688 family
      cl11542
      Location:1290 → 1415
      EcsB; Bacterial ABC transporter protein EcsB

    7. XM_039112296.1 → XP_038968224.1  pecanex-like protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8I6A512
      Conserved Domains (2) summary
      PHA03307
      Location:293 → 585
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam05041
      Location:1754 → 1980
      Pecanex_C; Pecanex protein (C-terminus)

    8. XM_039112298.1 → XP_038968226.1  pecanex-like protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8I6A512
      Conserved Domains (2) summary
      PHA03307
      Location:267 → 559
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam05041
      Location:1728 → 1954
      Pecanex_C; Pecanex protein (C-terminus)

    9. XM_063261935.1 → XP_063118005.1  pecanex-like protein 1 isoform X10

      UniProtKB/TrEMBL
      A6JDP0

    10. XM_039112301.2 → XP_038968229.1  pecanex-like protein 1 isoform X9

      Conserved Domains (1) summary
      pfam05041
      Location:892 → 1118
      Pecanex_C; Pecanex protein (C-terminus)

    11. XM_039112300.2 → XP_038968228.1  pecanex-like protein 1 isoform X9

      Conserved Domains (1) summary
      pfam05041
      Location:892 → 1118
      Pecanex_C; Pecanex protein (C-terminus)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E9PSU6.1 GenPept UniProtKB/Swiss-Prot:E9PSU6

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