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    LINC00507 long intergenic non-protein coding RNA 507 [ Homo sapiens (human) ]

    Gene ID: 100862680, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC00507provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 507provided by HGNC
    Primary source
    HGNC:HGNC:43558
    See related
    Ensembl:ENSG00000256193 AllianceGenome:HGNC:43558
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward brain (RPKM 3.5) See more
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    Genomic context

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    See LINC00507 in Genome Data Viewer
    Location:
    12q24.32
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (127915410..127951552)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (127943901..127980094)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (128399955..128436097)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene FGFR1 oncogene partner 2 pseudogene Neighboring gene long intergenic non-protein coding RNA 2393 Neighboring gene long intergenic non-protein coding RNA 508 Neighboring gene Sharpr-MPRA regulatory region 13079 Neighboring gene MPRA-validated peak2041 silencer Neighboring gene long intergenic non-protein coding RNA 2441 Neighboring gene MPRA-validated peak2042 silencer Neighboring gene uncharacterized LOC105370071

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046392.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC087894
      Related
      ENST00000667075.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      127915410..127951552
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      127943901..127980094
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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