U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tex13a testis expressed 13A [ Mus musculus (house mouse) ]

    Gene ID: 67944, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Tex13aprovided by MGI
    Official Full Name
    testis expressed 13Aprovided by MGI
    Primary source
    MGI:MGI:1915194
    See related
    Ensembl:ENSMUSG00000071686 AllianceGenome:MGI:1915194
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700025D03Rik
    Summary
    Predicted to enable mRNA binding activity. Orthologous to several human genes including TEX13A (testis expressed 13A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 19.4) See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tex13a in Genome Data Viewer
    Location:
    X F1; X 60.22 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (137108907..137110357, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (138208158..138209580, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_47981 Neighboring gene predicted gene 8036 Neighboring gene interleukin 1 receptor accessory protein-like 2 Neighboring gene STARR-seq mESC enhancer starr_47982 Neighboring gene STARR-seq mESC enhancer starr_47983 Neighboring gene protein transport protein Sec61 subunit gamma pseudogene Neighboring gene predicted gene, 22057 Neighboring gene predicted gene, 23958

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Tex13a Optimizes Sperm Motility via Its Potential Roles in mRNA Turnover. Li Y, et al. Front Cell Dev Biol, 2021. PMID 34733855, Free PMC Article
    2. CRISPR/Cas9-mediated genome editing reveals 30 testis-enriched genes dispensable for male fertility in mice†. Lu Y, et al. Biol Reprod, 2019 Aug 1. PMID 31201419, Free PMC Article
    3. An abundance of X-linked genes expressed in spermatogonia. Wang PJ, et al. Nat Genet, 2001 Apr. PMID 11279525
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    testis-expressed protein 13A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026469.4 → NP_080745.2  testis-expressed protein 13A

      See identical proteins and their annotated locations for NP_080745.2

      Status: VALIDATED

      Source sequence(s)
      AL672205
      Consensus CDS
      CCDS41142.1
      UniProtKB/TrEMBL
      A2AFS9
      Related
      ENSMUSP00000094038.3, ENSMUST00000096314.3
      Conserved Domains (3) summary
      smart00547
      Location:347 → 369
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:349 → 368
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam15186
      Location:5 → 152
      TEX13; Testis-expressed sequence 13 protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      137108907..137110357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528604.2 → XP_006528667.1  testis-expressed protein 13A isoform X1

      Conserved Domains (3) summary
      smart00547
      Location:297 → 319
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:299 → 318
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam15186
      Location:53 → 102
      TEX13; Testis-expressed sequence 13 protein family

    2. XM_006528605.1 → XP_006528668.1  testis-expressed protein 13A isoform X2

      Conserved Domains (3) summary
      smart00547
      Location:228 → 250
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:230 → 249
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam15186
      Location:1 → 33
      TEX13; Testis-expressed sequence 13 protein family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools