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    LINC01234 long intergenic non-protein coding RNA 1234 [ Homo sapiens (human) ]

    Gene ID: 100506465, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01234provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1234provided by HGNC
    Primary source
    HGNC:HGNC:49757
    See related
    Ensembl:ENSG00000249550 AllianceGenome:HGNC:49757
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MBOP; LCAL84; onco-lncRNA-32
    Expression
    Biased expression in brain (RPKM 1.1) and testis (RPKM 0.5) See more
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    Genomic context

    See LINC01234 in Genome Data Viewer
    Location:
    12q24.13
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (113744577..113773683, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (113720398..113749505, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (114182382..114211488, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114079299-114079817 Neighboring gene uncharacterized LOC105369991 Neighboring gene VISTA enhancer hs1571 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114132877-114133376 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114140827-114141326 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114206803-114207314 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_24661 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114215183-114215682 Neighboring gene NANOG hESC enhancer GRCh37_chr12:114222326-114222862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114243165-114243665 Neighboring gene dynein light chain LC8-type 1 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114255753-114256680 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114256681-114257606 Neighboring gene RNA binding motif protein 19 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114294867-114295368 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114295369-114295868 Neighboring gene uncharacterized LOC124903025 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:114300792-114301991

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110025.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon compared to variant 1.
      Source sequence(s)
      AC009731
      Related
      ENST00000547963.1
    2. NR_110026.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC009731

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      113744577..113773683 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      113720398..113749505 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)