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    C3h20orf144 similar to human chromosome 20 open reading frame 144 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499927, updated on 17-Aug-2024

    Summary

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    Official Symbol
    C3h20orf144provided by RGD
    Official Full Name
    similar to human chromosome 20 open reading frame 144provided by RGD
    Primary source
    RGD:1561517
    See related
    EnsemblRapid:ENSRNOG00000016583 AllianceGenome:RGD:1561517
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561517
    Summary
    Orthologous to human C20orf144 (chromosome 20 open reading frame 144). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 230.5) and Thymus (RPKM 14.5) See more
    Orthologs
    human mouse all
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    Genomic context

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    See C3h20orf144 in Genome Data Viewer
    Location:
    3q41
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (163514340..163515531)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (143053971..143055327)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (150052310..150053674)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene CBFA2/RUNX1 partner transcriptional co-repressor 2 Neighboring gene ribosomal protein S10, pseudogene 7 Neighboring gene zinc finger FYVE-type containing 21, pseudogene 1 Neighboring gene N-terminal EF-hand calcium binding protein 3 Neighboring gene actin-like 10 Neighboring gene E2F transcription factor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C20orf144 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001135901.2 → NP_001129373.1  uncharacterized protein C20orf144 homolog

      See identical proteins and their annotated locations for NP_001129373.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6KHZ7, Q1AHR4
      Conserved Domains (1) summary
      pfam15318
      Location:1 → 189
      Bclt; Putative Bcl-2 like protein of testis

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      163514340..163515531
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006235357.5 → XP_006235419.1  uncharacterized protein C20orf144 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZXX8, A6KHZ7
      Related
      ENSRNOP00000084364.1, ENSRNOT00000109474.2
      Conserved Domains (1) summary
      pfam15318
      Location:1 → 170
      Bclt; Putative Bcl-2 like protein of testis

    2. XM_006235356.5 → XP_006235418.1  uncharacterized protein C20orf144 homolog isoform X1

      See identical proteins and their annotated locations for XP_006235418.1

      UniProtKB/TrEMBL
      A6KHZ6, A6KHZ7, F7F8K5
      Conserved Domains (1) summary
      pfam15318
      Location:1 → 203
      Bclt; Putative Bcl-2 like protein of testis
    Nucleotide Protein Strain
    Heading Accession and Version

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