U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC02544 long intergenic non-protein coding RNA 2544 [ Homo sapiens (human) ]

    Gene ID: 101929504, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC02544provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2544provided by HGNC
    Primary source
    HGNC:HGNC:53578
    See related
    Ensembl:ENSG00000223485 AllianceGenome:HGNC:53578
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC02544 in Genome Data Viewer
    Location:
    6q27
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (169175304..169182740, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (170526893..170534322, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (169575399..169582835, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901469 Neighboring gene long intergenic non-protein coding RNA 1615 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169576328-169576828 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169585397-169585896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169587933-169588434 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169588435-169588934 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17794 Neighboring gene THBS2 antisense RNA 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:169624128-169625327 Neighboring gene uncharacterized LOC124901470 Neighboring gene MPRA-validated peak6323 silencer Neighboring gene thrombospondin 2 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:169639978-169641177 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:169651477-169651990 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:169652503-169653015 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:169653016-169653527 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169663055-169663557 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169666201-169666700 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:169669953-169670713 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169684859-169685360 Neighboring gene MPRA-validated peak6324 silencer Neighboring gene vesicle trafficking 1 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125863.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AF086258, AL136129
      Related
      ENST00000564830.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      169175304..169182740 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      170526893..170534322 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)