U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    4930579G24Rik RIKEN cDNA 4930579G24 gene [ Mus musculus (house mouse) ]

    Gene ID: 75939, updated on 2-Nov-2024

    Summary

    Official Symbol
    4930579G24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930579G24 geneprovided by MGI
    Primary source
    MGI:MGI:1923189
    See related
    Ensembl:ENSMUSG00000027811 AllianceGenome:MGI:1923189
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in cytosol. Orthologous to human C4orf46 (chromosome 4 open reading frame 46). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in testis adult (RPKM 10.6), liver E14 (RPKM 5.4) and 18 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 4930579G24Rik in Genome Data Viewer
    Location:
    3 E3; 3 34.93 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (79536386..79540127)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (79629079..79632820)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930589L23 gene Neighboring gene STARR-seq mESC enhancer starr_08006 Neighboring gene peptidylprolyl isomerase D (cyclophilin D) Neighboring gene electron transferring flavoprotein, dehydrogenase Neighboring gene relaxin/insulin-like family peptide receptor 1 Neighboring gene STARR-seq mESC enhancer starr_08007 Neighboring gene VISTA enhancer mm1650 Neighboring gene STARR-seq mESC enhancer starr_08009 Neighboring gene transmembrane protein 144 Neighboring gene predicted gene, 26420

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C4orf46 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029482.1NP_083758.1  uncharacterized protein C4orf46 homolog

      See identical proteins and their annotated locations for NP_083758.1

      Status: VALIDATED

      Source sequence(s)
      BC052483, BY309631
      Consensus CDS
      CCDS50936.1
      UniProtKB/Swiss-Prot
      Q3UUX7, Q9D4P8
      Related
      ENSMUSP00000029388.9, ENSMUST00000029388.10
      Conserved Domains (1) summary
      pfam15725
      Location:3185
      DUF4676; Domain of unknown function (DUF4676)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      79536386..79540127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)