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    Tmem139 transmembrane protein 139 [ Mus musculus (house mouse) ]

    Gene ID: 109218, updated on 2-Nov-2024

    Summary

    Official Symbol
    Tmem139provided by MGI
    Official Full Name
    transmembrane protein 139provided by MGI
    Primary source
    MGI:MGI:1924444
    See related
    Ensembl:ENSMUSG00000071506 AllianceGenome:MGI:1924444
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A930027H06Rik
    Summary
    Orthologous to human TMEM139 (transmembrane protein 139). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in duodenum adult (RPKM 12.1), colon adult (RPKM 11.7) and 8 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Tmem139 in Genome Data Viewer
    Location:
    6 B2.1; 6 20.54 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (42238866..42241489)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (42261932..42264555)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene taste receptor, type 2, member 144 Neighboring gene STARR-positive B cell enhancer mm9_chr6:42195755-42196055 Neighboring gene glutathione S-transferase kappa 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:42214692-42214906 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:42214909-42215092 Neighboring gene caspase 2 Neighboring gene chloride channel, voltage-sensitive 1 Neighboring gene predicted gene, 38797

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (1)  1 citation

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175408.4NP_780617.2  transmembrane protein 139

      See identical proteins and their annotated locations for NP_780617.2

      Status: VALIDATED

      Source sequence(s)
      BC096053, BY032793, BY081702, CF585299
      Consensus CDS
      CCDS51757.1
      UniProtKB/TrEMBL
      E9PX92
      Related
      ENSMUSP00000100590.3, ENSMUST00000095987.4
      Conserved Domains (1) summary
      pfam15345
      Location:67194
      TMEM51; Transmembrane protein 51

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      42238866..42241489
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006505327.4XP_006505390.1  transmembrane protein 139 isoform X1

      See identical proteins and their annotated locations for XP_006505390.1

      UniProtKB/TrEMBL
      E9PX92
      Conserved Domains (1) summary
      pfam15345
      Location:67194
      TMEM51; Transmembrane protein 51
    2. XM_006505328.4XP_006505391.1  transmembrane protein 139 isoform X1

      See identical proteins and their annotated locations for XP_006505391.1

      UniProtKB/TrEMBL
      E9PX92
      Conserved Domains (1) summary
      pfam15345
      Location:67194
      TMEM51; Transmembrane protein 51
    3. XM_006505326.4XP_006505389.1  transmembrane protein 139 isoform X1

      See identical proteins and their annotated locations for XP_006505389.1

      UniProtKB/TrEMBL
      E9PX92
      Conserved Domains (1) summary
      pfam15345
      Location:67194
      TMEM51; Transmembrane protein 51