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    LOC4333544 homeobox-leucine zipper protein HOX32-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333544, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4333544
    Gene description
    homeobox-leucine zipper protein HOX32-like
    Locus tag
    OSNPB_030640800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    hox32; OsHox32
    Expression
    Broad expression in roots before flowering (RPKM 21.7), flowers (RPKM 7.5) and 6 other tissues See more
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    Genomic context

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    See LOC4333544 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (24651834..24657645, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol N-acetylglucosaminyltransferase subunit P Neighboring gene kxDL motif-containing protein 1 Neighboring gene cationic amino acid transporter 1 Neighboring gene BTB/POZ domain-containing protein At1g30440

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox-leucine zipper protein HOX32
    Names
    B1394A07.10
    HD-ZIP protein HOX32
    Homeodomain transcription factor HOX32
    LOC_Os03g43930
    homeodomain leucine zipper protein 32

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402190.1 → NP_001389119.1  homeobox-leucine zipper protein HOX32

      Status: VALIDATED

      Source sequence(s)
      AK103284, CI119658, CI613580, CI618156
      UniProtKB/Swiss-Prot
      A2XK30, A5JPW6, B7EUE5, Q6AST1, Q6Q503, Q9FR80

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24651834..24657645 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776998.1 → XP_015632484.1  homeobox-leucine zipper protein HOX32

      UniProtKB/Swiss-Prot
      Q6AST1
      Conserved Domains (4) summary
      cd08875
      Location:175 → 391
      START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
      cd14686
      Location:84 → 123
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
      pfam00046
      Location:32 → 90
      Homeobox; Homeobox domain
      pfam08670
      Location:717 → 858
      MEKHLA; MEKHLA domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AST1.1 GenPept UniProtKB/Swiss-Prot:Q6AST1

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