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    Gm5124 predicted pseudogene 5124 [ Mus musculus (house mouse) ]

    Gene ID: 331392, updated on 6-Oct-2024

    Summary

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    Official Symbol
    Gm5124provided by MGI
    Official Full Name
    predicted pseudogene 5124provided by MGI
    Primary source
    MGI:MGI:3643622
    See related
    Ensembl:ENSMUSG00000121832 AllianceGenome:MGI:3643622
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG331392
    Expression
    Biased expression in CNS E18 (RPKM 8.5), whole brain E14.5 (RPKM 6.3) and 11 other tissues See more
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    Genomic context

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    See Gm5124 in Genome Data Viewer
    Location:
    X A2; X 16.68 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (21227104..21230866)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (21360865..21364627)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930453H23 gene Neighboring gene STARR-seq mESC enhancer starr_46895 Neighboring gene STARR-seq mESC enhancer starr_46896 Neighboring gene predicted gene 6938 Neighboring gene STARR-seq mESC enhancer starr_46898 Neighboring gene STARR-seq mESC enhancer starr_46899 Neighboring gene angiotensin II receptor, type 2 Neighboring gene predicted gene, 22592

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    2. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Other Names

    • nucleolar and coiled-body phosphoprotein 1 pseudogene

    Clone Names

    • MGC169451

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045668.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI426008, AK032684, BM943806
      Related
      ENSMUST00000127554.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      21227104..21230866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_198633.3: Suppressed sequence

      Description
      NM_198633.3: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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